Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 2
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P01550_001 | Banana | cytosol | 42.0 | 16.98 |
| Solyc10g037930.1.1 | Tomato | cytosol | 16.0 | 14.91 |
| PGSC0003DMT400067804 | Potato | cytosol | 18.67 | 12.84 |
| TraesCS1A01G102200.1 | Wheat | nucleus, plastid | 30.0 | 11.78 |
| VIT_01s0244g00070.t01 | Wine grape | nucleus, plastid | 43.33 | 11.75 |
| VIT_17s0000g00390.t01 | Wine grape | mitochondrion, plastid | 43.33 | 11.38 |
| TraesCS1B01G112600.1 | Wheat | plastid | 30.0 | 8.4 |
| TraesCS1D01G093800.1 | Wheat | plastid | 30.0 | 8.4 |
| VIT_14s0030g00800.t01 | Wine grape | cytosol, plastid | 6.0 | 8.11 |
| KRG96906 | Soybean | nucleus, plastid | 34.0 | 7.98 |
| KRH68645 | Soybean | nucleus, plastid | 34.0 | 7.77 |
| KXG21299 | Sorghum | mitochondrion | 28.67 | 7.45 |
| Zm00001d024833_P001 | Maize | mitochondrion | 16.67 | 7.35 |
| VIT_14s0030g00770.t01 | Wine grape | cytosol | 1.33 | 3.85 |
Protein Annotations
| MapMan:35.1 | ProteinID:CBI34285 | ProteinID:CBI34285.3 | ncoils:Coil | UniProt:D7TUW0 | EMBL:FN596249 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001849 | InterPro:PH_domain | PFscan:PS50003 |
| PANTHER:PTHR31762 | PANTHER:PTHR31762:SF4 | TMHMM:TMhelix | UniParc:UPI0001BE432F | ArrayExpress:VIT_14s0030g00780 | EnsemblPlantsGene:VIT_14s0030g00780 |
| EnsemblPlants:VIT_14s0030g00780.t01 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr14:+:5009152..5010295
Molecular Weight (calculated)
17454.3 Da
IEP (calculated)
8.063
GRAVY (calculated)
0.073
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVNKKLTDR SDISIKAENT DQFANKWIAA LKVAAQTHGG RNEEIVALRM EAESARDEAI STLEQLHEAE SEIKALRTMN QRMMLTQEEM EVVVLKRCWL
101: ARYWSLCVQY GKVILFYLFF NIFSGAFFFF SFIARLFHMT YKLVSSFSCL
101: ARYWSLCVQY GKVILFYLFF NIFSGAFFFF SFIARLFHMT YKLVSSFSCL
001: MSARSTTPTP IPNLMPPSRV SVKTPVSIPP LDPPTRSRDK RFFADVPSVN SKEKGDQREA SALRDELDML QEENENVLEK LRRAEEKRVE AEARAKELEK
101: QVASLGEGVS LEAKLLSRKE AALRQREAAL NVAKQKKSGK DEEIVSLRSE LENLKDEATT AAERLQEAES EAKSLRTMTQ RMILTQDEME EVVLKRCWLA
201: RYWGLAVQHG ICADIAPSRQ EHWSKLAPLP FELVTSAAQK AKELSWDKGG NDRSKAARDL SDLTGEGNIE SMLSVEMGLR ELASLKVEDA VVLIFAQQRK
301: LSLVRHTVSD SKGHGESRFI DAYELGEAEQ EDVAFKQAWL MYFWGRAKLH GVEDDIAEER VQLWISRSSG KSQTTSHDAL DVERGLIELR KLGIEQQLWE
401: ASRREIDQLP SPTSSNHDLD ADS
101: QVASLGEGVS LEAKLLSRKE AALRQREAAL NVAKQKKSGK DEEIVSLRSE LENLKDEATT AAERLQEAES EAKSLRTMTQ RMILTQDEME EVVLKRCWLA
201: RYWGLAVQHG ICADIAPSRQ EHWSKLAPLP FELVTSAAQK AKELSWDKGG NDRSKAARDL SDLTGEGNIE SMLSVEMGLR ELASLKVEDA VVLIFAQQRK
301: LSLVRHTVSD SKGHGESRFI DAYELGEAEQ EDVAFKQAWL MYFWGRAKLH GVEDDIAEER VQLWISRSSG KSQTTSHDAL DVERGLIELR KLGIEQQLWE
401: ASRREIDQLP SPTSSNHDLD ADS
Arabidopsis Description
SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.