Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- cytosol 2
- nucleus 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g037930.1.1 | Tomato | cytosol | 31.53 | 21.74 |
| PGSC0003DMT400067804 | Potato | cytosol | 33.33 | 16.97 |
| GSMUA_Achr2P01550_001 | Banana | cytosol | 36.04 | 10.78 |
| TraesCS1A01G102200.1 | Wheat | nucleus, plastid | 33.33 | 9.69 |
| VIT_01s0244g00070.t01 | Wine grape | nucleus, plastid | 41.44 | 8.32 |
| VIT_17s0000g00390.t01 | Wine grape | mitochondrion, plastid | 37.84 | 7.36 |
| TraesCS1B01G112600.1 | Wheat | plastid | 34.23 | 7.09 |
| TraesCS1D01G093800.1 | Wheat | plastid | 34.23 | 7.09 |
| KRG96906 | Soybean | nucleus, plastid | 40.54 | 7.04 |
| KRH68645 | Soybean | nucleus, plastid | 40.54 | 6.86 |
| VIT_14s0030g00780.t01 | Wine grape | cytosol | 8.11 | 6.0 |
| KXG21299 | Sorghum | mitochondrion | 29.73 | 5.72 |
| VIT_14s0030g00770.t01 | Wine grape | cytosol | 1.8 | 3.85 |
| Zm00001d024833_P001 | Maize | mitochondrion | 5.41 | 1.76 |
Protein Annotations
| ArrayExpress:VIT_14s0030g00800 | EMBL:FN596249 | EnsemblPlants:VIT_14s0030g00800.t01 | EnsemblPlantsGene:VIT_14s0030g00800 | PANTHER:PTHR31762 | PANTHER:PTHR31762:SF3 |
| ProteinID:CCB58147 | ProteinID:CCB58147.1 | UniParc:UPI000210A17C | UniProt:F6HTY6 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr14:+:5048946..5054130
Molecular Weight (calculated)
11985.4 Da
IEP (calculated)
5.139
GRAVY (calculated)
0.055
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSLVPSQN LLLCILSSSD AEEREKAPRD LNEPSGEGNI ESMLLVEIGL RELASLKVEE AVVYALAHHR RSSSLKSDFA VGLGSKFGGC FGSSLSNDIP
101: LLFFATFIPK K
101: LLFFATFIPK K
001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYGNG KVSLTLFSLF STLM
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYGNG KVSLTLFSLF STLM
Arabidopsis Description
SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.