Factsheet for VIT_17s0000g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g00770.t01	Wine grape	cytosol	7.18	78.85
KRH63847	Soybean	endoplasmic reticulum, nucleus	72.5	71.88
KRH54118	Soybean	endoplasmic reticulum	72.5	71.88
VIT_01s0244g00070.t01	Wine grape	nucleus, plastid	67.78	69.98
GSMUA_Achr4P00070_001	Banana	plastid	62.87	68.91
Solyc03g118390.2.1	Tomato	nucleus	66.9	67.37
CDY64711	Canola	cytosol	32.57	63.7
EES04143	Sorghum	plastid	60.95	61.92
GSMUA_Achr9P01070_001	Banana	cytosol	20.67	61.46
Os01t0928100-01	Rice	plasma membrane	61.3	61.4
CDY05877	Canola	nucleus, plastid	59.72	60.14
AT3G48860.2	Thale cress	nucleus	60.6	59.97
GSMUA_Achr9P01060_001	Banana	plastid	40.46	59.69
Bra018031.1-P	Field mustard	mitochondrion	59.37	58.25
TraesCS3A01G442300.2	Wheat	plastid	58.67	58.06
TraesCS3D01G435000.1	Wheat	plastid	58.32	57.71
TraesCS3B01G476100.1	Wheat	plastid	58.14	57.54
CDX68503	Canola	nucleus	7.71	57.14
AT5G23700.3	Thale cress	mitochondrion, plastid	57.62	56.92
HORVU3Hr1G096450.1	Barley	plastid	58.67	55.65
CDX80382	Canola	mitochondrion	52.89	55.62
CDX88044	Canola	mitochondrion	52.71	55.54
Bra009703.1-P	Field mustard	mitochondrion	48.51	54.96
VIT_14s0030g00780.t01	Wine grape	cytosol	11.38	43.33
CDY03383	Canola	nucleus, plastid	45.71	39.97
CDY34338	Canola	nucleus, plastid	45.18	39.63
VIT_14s0030g00800.t01	Wine grape	cytosol, plastid	7.36	37.84
Bra013860.1-P	Field mustard	nucleus, plastid	46.06	37.68
AT4G25070.2	Thale cress	plastid	47.46	35.33
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	40.63	32.13
Zm00001d049273_P001	Maize	nucleus	40.11	32.03
Os11t0520500-00	Rice	plasma membrane	38.18	31.5
TraesCS4D01G120700.1	Wheat	nucleus	40.46	30.92
TraesCS4A01G192600.1	Wheat	nucleus	40.63	29.9
TraesCS4B01G122700.1	Wheat	nucleus	40.46	29.62
EES08547	Sorghum	nucleus	40.11	27.59

Protein Annotations

EntrezGene:100256039	wikigene:100256039	MapMan:22.5.7.1.2	EMBL:AM463896	ProteinID:CAN81274	ProteinID:CAN81274.1
ProteinID:CCB43359	ProteinID:CCB43359.1	ncoils:Coil	UniProt:F6GT38	EMBL:FN594950	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100256039	wikigene:LOC100256039	PANTHER:PTHR31762	PANTHER:PTHR31762:SF5
UniParc:UPI0001984F73	ArrayExpress:VIT_17s0000g00390	EnsemblPlantsGene:VIT_17s0000g00390	EnsemblPlants:VIT_17s0000g00390.t01	unigene:Vvi.5870	RefSeq:XP_002284492
RefSeq:XP_002284492.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:266823..275617

Molecular Weight (calculated)

63189.1 Da

IEP (calculated)

6.263

GRAVY (calculated)

-0.693

Length

571 amino acids

Sequence
(BLAST)

001: MDRRRTGSPV YGRQWSGGSS STGSSSPAMS PAHPHSRLAS GAGGVSTIKR SQNVAAKAAA QRLAQVMASQ TADDDDDDDD LGFRYSAPPP PAPSSYASSI
101: NSNHSISSAR ATRSPSPALG RNFVEHTPSV RSTSAGRPAM SVRAMPIVPS SRATLRNPVS IPPMEPPAKN RPREKRSTLD LGHINLKGAE NQHEASALHD
201: ELDMLQEENE NIREKLRLAE ERREEAEARS RELEKQVAAL GEGVSLEAKL LSRKEAALRQ KEAALKAAKQ TKDGRDEEIA NLRLEIQNLK DGATTAIEQL
301: QEAESEAKAL RSMTKRMILT QEEMEEVVLK RCWLARYWGL AVHHAICADI ALSKHEHWSS LAPLPFEVVI SAGQKAKEES WNGGGEDPDR SKLVRDLSDL
401: TGEGNIESML SVEMGLRELA SLKVEDAIVL ALALHRRPNL VRQYSSDKSP GDPKSMESFE LNQEEAEDVL FKEAWLTYFW RRAKVHGVEE DIAEERLQFW
501: ISRSGQTPTS HDAVDVERGL RELRKLGIEQ QLWEASRKEN DQPSYASIVN HKPSYVSIVN QKPVAESDYT P

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.