CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018031.1-P	Field mustard	mitochondrion	98.24	95.7
CDY64711	Canola	cytosol	48.85	94.86
AT3G48860.2	Thale cress	nucleus	85.71	84.23
CDX68503	Canola	nucleus	11.29	83.12
CDY70607	Canola	nucleus	26.98	65.38
CDX80382	Canola	mitochondrion	61.38	64.09
CDX88044	Canola	mitochondrion	60.85	63.65
KRH63847	Soybean	endoplasmic reticulum, nucleus	61.55	60.59
KRH54118	Soybean	endoplasmic reticulum	61.02	60.07
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	60.14	59.72
GSMUA_Achr4P00070_001	Banana	plastid	54.32	59.12
Solyc03g118390.2.1	Tomato	nucleus	57.67	57.67
EES04143	Sorghum	plastid	55.73	56.23
Os01t0928100-01	Rice	plasma membrane	56.08	55.79
TraesCS3B01G476100.1	Wheat	plastid	54.85	53.9
TraesCS3A01G442300.2	Wheat	plastid	54.32	53.38
TraesCS3D01G435000.1	Wheat	plastid	53.97	53.03
GSMUA_Achr9P01070_001	Banana	cytosol	17.46	51.56
GSMUA_Achr9P01060_001	Banana	plastid	34.92	51.16
HORVU3Hr1G096450.1	Barley	plastid	54.14	51.0
CDY09779	Canola	nucleus, plastid	48.15	50.74
CDX69654	Canola	nucleus, plastid	48.32	50.65
CDY34338	Canola	nucleus, plastid	45.86	39.94
CDY03383	Canola	nucleus, plastid	45.68	39.66
Zm00001d049273_P001	Maize	nucleus	37.39	29.65
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	37.57	29.5
TraesCS4D01G120700.1	Wheat	nucleus	37.74	28.65
CDY41922	Canola	plastid	40.21	28.57
CDY27806	Canola	plastid	38.98	28.3
Os11t0520500-00	Rice	plasma membrane	34.22	28.03
TraesCS4A01G192600.1	Wheat	nucleus	37.92	27.71
TraesCS4B01G122700.1	Wheat	nucleus	37.57	27.31
EES08547	Sorghum	nucleus	38.1	26.02

Protein Annotations

EnsemblPlants:CDY05877	EnsemblPlantsGene:GSBRNA2T00121676001	ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF4	ProteinID:CDY05877
ProteinID:CDY05877.1	SEG:seg	UniParc:UPI0004EE053A	MapMan:35.1	:	:

Description

BnaC08g20540D

Coordinates

chrLK031966:+:245197..249703

Molecular Weight (calculated)

62952.8 Da

IEP (calculated)

5.672

GRAVY (calculated)

-0.705

Length

567 amino acids

Sequence
(BLAST)

001: MDRRRAGSPV YGRQWSDTSN STESSSPTMS PAHRKQLGGV GGFSTAKRSQ NVAAKAAAQR LAKVMALQNK DNGDEDEEDE DEDLSLRFAP ASLKPAHSKP
101: PAVSFALRNR SPSPALGRNF VEQVPSVRSA SAGRPSISTR STTPTPTPNP MPPSRVSLKA PSAIPPLDPP TRNRDKRFFA DLPSVNSKEK GDQREASALR
201: DELDMLQEEN EIVLEKLRRA EEKKAEAEAR AKELEKQVAS LGEGVSLEAK LLSRKEAALR QREATLNAAK QKNNGKDDVL VSLRSELESL KDEATTAAER
301: LQEAESEAKS LRTMTQRMIL TQDEMEEVVL KRCWLARYWG LAVQYDIFAD IALSRHEHWS ALAPLPFELV TSAAQKAKDL SWDKGSSKFC FSGNDRNRAA
401: RDLSDLTGEG NIESMLSVEM GLRELASLKV EDAIVLAFAQ QRKPSLIRQT VSDHKGHGES RFVDAYELGE AEQEDVAFKQ AWLMYFWGRA KLLGVEEDIA
501: EERVQLWISR SNGKSTTSHD SLDVERGLIE LRKLGIEQQL WEASRREIDQ LPSPTSSPSN HDLDADP

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.