Factsheet for Os01t0928100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04143	Sorghum	plastid	84.74	85.94
TraesCS3B01G476100.1	Wheat	plastid	84.74	83.71
TraesCS3A01G442300.2	Wheat	plastid	83.86	82.84
TraesCS3D01G435000.1	Wheat	plastid	83.33	82.32
HORVU3Hr1G096450.1	Barley	plastid	83.16	78.74
GSMUA_Achr4P00070_001	Banana	plastid	62.63	68.52
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	61.4	61.3
VIT_01s0244g00070.t01	Wine grape	nucleus, plastid	58.25	60.04
KRH36369	Soybean	nucleus, plastid	55.44	59.74
KRH63847	Soybean	endoplasmic reticulum, nucleus	60.35	59.72
KRH54118	Soybean	endoplasmic reticulum	60.18	59.55
KRG93140	Soybean	plastid	54.74	59.2
CDY64711	Canola	cytosol	29.65	57.88
Solyc03g118390.2.1	Tomato	nucleus	56.32	56.61
AT3G48860.2	Thale cress	nucleus	56.84	56.15
CDY05877	Canola	nucleus, plastid	55.79	56.08
Bra018031.1-P	Field mustard	mitochondrion	55.79	54.64
AT5G13260.1	Thale cress	plastid	50.7	53.82
CDY09779	Canola	nucleus, plastid	50.53	53.53
Solyc05g023770.2.1	Tomato	plastid	36.84	52.9
CDX69654	Canola	nucleus, plastid	50.18	52.87
AT5G23700.3	Thale cress	mitochondrion, plastid	53.51	52.77
CDX68503	Canola	nucleus	7.02	51.95
Bra008842.1-P	Field mustard	nucleus, plastid	48.6	51.39
Bra009703.1-P	Field mustard	mitochondrion	45.44	51.39
CDX80382	Canola	mitochondrion	48.95	51.38
CDX88044	Canola	mitochondrion	48.25	50.74
CDY34338	Canola	nucleus, plastid	42.98	37.63
CDY03383	Canola	nucleus, plastid	42.81	37.37
CDY70607	Canola	nucleus	15.26	37.18
Bra013860.1-P	Field mustard	nucleus, plastid	42.81	34.96
Os11t0520500-00	Rice	plasma membrane	40.18	33.09
AT4G25070.2	Thale cress	plastid	43.33	32.2

Protein Annotations

EMBL:AK120714	EnsemblPlants:Os01t0928100-01	EnsemblPlantsGene:Os01g0928100	EntrezGene:4326960	ncoils:Coil	PANTHER:PTHR31762
PANTHER:PTHR31762:SF4	ProteinID:BAD88164.1	ProteinID:BAF07187.1	ProteinID:BAS76010.1	RefSeq:XP_015622187.1	SEG:seg
SUPFAM:SSF57997	UniParc:UPI00004C2BB6	UniProt:Q5JK43	MapMan:22.5.7.1.2	:	:

Description

Similar to expressed protein. (Os01t0928100-01)

Coordinates

chr1:-:40723385..40730507

Molecular Weight (calculated)

62182.8 Da

IEP (calculated)

5.596

GRAVY (calculated)

-0.611

Length

570 amino acids

Sequence
(BLAST)

001: MDRLRAGSPV YGRQRSGSST GSSSPGGVSP SHHRSSSTSS AASAAAGLGG GVSNVRRTQN VAARAAAARL AQVMASQSAA AAAGRDDDDD DDDYANDHPP
101: APPPARFGSA RPAAAHGSNG VSLLGRTARS PSPALGRNIV EPPPTVRSTS AGRPAVASRP TTTVVPPIKT STTLRTPSPI PPVAVEPPVD RSRQKRFDTG
201: HLNSRESTPK REASALQDEL DILQEENESV LEKLRLAEER CEEAEARAKE LEKQVAALGE GVSLEARLLS RKEAALKQRE AALKAARESK DGKDGEVTTL
301: KHELDCAKEE VVTAMEQLKE AETETKALRS MTQRMILTQE EMEEVVLKRC WLSRYWGLAV QYGVYPEIAV SKHEHWSSLA PLPLEVVLSA GQKAKEEPLK
401: QGEDDAQRRN KLVRDMSDVM GEGNIESMLS VEMGLRELSS LKVEDAVVVA LGQHRRPSIV RQFTSDFKSP GEPKFLEAFD LSHEEAEDVS FKQAWLIYFW
501: RRAKTHGIEE DIAEERLQFW IGRNAVAPTS HDAIDVERGL TELRKLGIEQ QLWEGSRADI DEDSSAIENH

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.