Factsheet for GSMUA_Achr4P00070_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04143	Sorghum	plastid	68.52	63.52
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	68.91	62.87
Os01t0928100-01	Rice	plasma membrane	68.52	62.63
GSMUA_Achr9P01060_001	Banana	plastid	46.07	62.02
KRH63847	Soybean	endoplasmic reticulum, nucleus	67.37	60.94
KRH54118	Soybean	endoplasmic reticulum	67.18	60.76
TraesCS3A01G442300.2	Wheat	plastid	66.6	60.14
TraesCS3D01G435000.1	Wheat	plastid	66.6	60.14
TraesCS3B01G476100.1	Wheat	plastid	65.83	59.45
VIT_01s0244g00070.t01	Wine grape	nucleus, plastid	62.76	59.13
Solyc03g118390.2.1	Tomato	nucleus	63.34	58.2
KRG93140	Soybean	plastid	58.35	57.69
HORVU3Hr1G096450.1	Barley	plastid	66.41	57.48
CDX68503	Canola	nucleus	8.45	57.14
KRH36369	Soybean	nucleus, plastid	56.81	55.95
GSMUA_Achr9P01070_001	Banana	cytosol	20.54	55.73
CDY64711	Canola	cytosol	30.71	54.79
CDY05877	Canola	nucleus, plastid	59.12	54.32
AT3G48860.2	Thale cress	nucleus	60.08	54.25
GSMUA_Achr2P01550_001	Banana	cytosol	38.0	53.37
Solyc05g023770.2.1	Tomato	plastid	40.5	53.15
Bra018031.1-P	Field mustard	mitochondrion	58.93	52.75
Bra009703.1-P	Field mustard	mitochondrion	50.86	52.58
AT5G23700.3	Thale cress	mitochondrion, plastid	57.77	52.08
CDX80382	Canola	mitochondrion	54.13	51.93
CDY09779	Canola	nucleus, plastid	53.36	51.67
CDX88044	Canola	mitochondrion	53.55	51.48
AT5G13260.1	Thale cress	plastid	52.78	51.21
CDX69654	Canola	nucleus, plastid	52.98	51.02
Bra008842.1-P	Field mustard	nucleus, plastid	50.1	48.42
CDY70607	Canola	nucleus	17.08	38.03
CDY34338	Canola	nucleus, plastid	45.11	36.1
CDY03383	Canola	nucleus, plastid	44.91	35.83
Bra013860.1-P	Field mustard	nucleus, plastid	44.91	33.52
AT4G25070.2	Thale cress	plastid	45.68	31.03

Protein Annotations

EnsemblPlants:GSMUA_Achr4P00070_001	EnsemblPlants:GSMUA_Achr4T00070_001	EnsemblPlantsGene:GSMUA_Achr4G00070_001	ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF4
SEG:seg	SUPFAM:SSF57997	UniParc:UPI0002951A16	UniProt:M0SJS4	MapMan:22.5.7.1.2	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G00070_001]

Coordinates

chr4:-:48305..62490

Molecular Weight (calculated)

57333.4 Da

IEP (calculated)

5.581

GRAVY (calculated)

-0.548

Length

521 amino acids

Sequence
(BLAST)

001: MERRGAGSPV YGRQWSGGSS STGSSSPGIS PAHHRSTSAS GLSGVRRTQN VAARAAAARL AQVMASQSAT AEEDEDEDEI PVAGGVGFRH GASRLAAGSN
101: GTALGASLMT KANRSPSPAL VRNLVEHTPS VRSSSAGRPS ISVRSAPLAP PSKTTLLTPS PIPPIEPPVD KRREKRFPSD IKHLNSGDSG IQRQASALQD
201: ELDMLQEENE SILEKLRLAE ERREEAEARA RELEKQVAAL GEGVSLEARL LSRKEAALRQ REAALEAARQ TKDGKDEEIA TLQKEVESAK EEAVAAVEQL
301: RQAESDAKAL QSMTQRMILS EEEMEEVVLK RCWLARYWGL AVHHGIYPEI AVTKHEHWSS LAPLPLEVVI SAGNHESERR NKFVRDLSDI TGEGNIESML
401: SVEKGLRELA SLKVEDAVVL ALAQHWRPNF VRQFSSELSQ EEIEDVTFKQ AWLIYFWRRA KAHGVEEDIA DERLQSWIGR IGQPPTSHDV VDVERGLIEL
501: KKLGIEQQLW EASRREIELD T

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.