Factsheet for GSMUA_Achr9P01060_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g023770.2.1	Tomato	plastid	53.23	51.89
GSMUA_Achr4P00070_001	Banana	plastid	62.02	46.07
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	59.69	40.46
KRH63847	Soybean	endoplasmic reticulum, nucleus	58.4	39.24
KRH54118	Soybean	endoplasmic reticulum	58.14	39.06
VIT_01s0244g00070.t01	Wine grape	nucleus, plastid	54.78	38.34
KRG93140	Soybean	plastid	50.13	36.81
Solyc03g118390.2.1	Tomato	nucleus	53.49	36.51
AT5G13260.1	Thale cress	plastid	48.84	35.2
AT3G48860.2	Thale cress	nucleus	52.2	35.01
KRH36369	Soybean	nucleus, plastid	47.8	34.97
CDY09779	Canola	nucleus, plastid	48.58	34.94
CDX69654	Canola	nucleus, plastid	48.84	34.94
CDY05877	Canola	nucleus, plastid	51.16	34.92
Bra018031.1-P	Field mustard	mitochondrion	51.16	34.02
AT5G23700.3	Thale cress	mitochondrion, plastid	49.87	33.39
CDY70607	Canola	nucleus	20.16	33.33
Bra008842.1-P	Field mustard	nucleus, plastid	45.22	32.47
GSMUA_Achr2P01550_001	Banana	cytosol	29.72	31.0
CDX80382	Canola	mitochondrion	43.41	30.94
CDX88044	Canola	mitochondrion	43.15	30.81
Bra009703.1-P	Field mustard	mitochondrion	39.79	30.56
CDY03383	Canola	nucleus, plastid	38.24	22.66
CDY34338	Canola	nucleus, plastid	37.47	22.27
Bra013860.1-P	Field mustard	nucleus, plastid	38.5	21.35
CDY64711	Canola	cytosol	16.02	21.23
AT4G25070.2	Thale cress	plastid	39.28	19.82
CDX68503	Canola	nucleus	0.78	3.9
GSMUA_Achr9P01070_001	Banana	cytosol	1.55	3.12

Protein Annotations

EnsemblPlants:GSMUA_Achr9P01060_001	EnsemblPlants:GSMUA_Achr9T01060_001	EnsemblPlantsGene:GSMUA_Achr9G01060_001	ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF5
SEG:seg	SUPFAM:SSF57997	UniParc:UPI0002967AAD	UniProt:M0TWG3	MapMan:35.1	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G01060_001]

Coordinates

chr9:+:801098..811052

Molecular Weight (calculated)

42045.4 Da

IEP (calculated)

7.735

GRAVY (calculated)

-0.671

Length

387 amino acids

Sequence
(BLAST)

001: MDRMRAGSPA YSRQGSGGSS GSGSSSPGMS PGHHRSASAS GISGIRRTQN LAAKAANARL AQVMASQAAA EEEDDDLLPA RAGAGFVGGV RFGLPRPVPS
101: SNGGGGASLF GRSARSPSPA LGRNIMETAS TNRSTSAGRS TLSVRTTPVV PQTKTTIRTP SPVPAIEPPV DRRRDKRFFP DMGHLNSREP GDLREASALQ
201: DQLDMLEEEN YNLLEKLQLA EERCKEAEAR SRELEKQVAN LGEGVSLEAR HLSRKEAALR QREEAMKAAM RTKDDKDEEL TALRQEVQSA KDETANTVDQ
301: LQDAELEVKA LRSMTHRMIL TQEEMEEVVL KRCWLARYWA LAVHHGIYPE IAAAKHEYWS SFAPLPLEVV SSAGQKTKDD SWSTGKS

Best Arabidopsis Sequence Match ( AT3G48860.1 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYGNG KVSLTLFSLF STLM

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.