Factsheet for Bra018031.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 1
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05877	Canola	nucleus, plastid	95.7	98.24
CDY64711	Canola	cytosol	47.59	94.86
AT3G48860.2	Thale cress	nucleus	85.4	86.14
Bra009703.1-P	Field mustard	mitochondrion	54.98	63.49
KRH63847	Soybean	endoplasmic reticulum, nucleus	59.79	60.42
KRH54118	Soybean	endoplasmic reticulum	59.28	59.9
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	58.25	59.37
GSMUA_Achr4P00070_001	Banana	plastid	52.75	58.93
Solyc03g118390.2.1	Tomato	nucleus	56.53	58.02
EES04143	Sorghum	plastid	53.95	55.87
Os01t0928100-01	Rice	plasma membrane	54.64	55.79
TraesCS3B01G476100.1	Wheat	plastid	53.44	53.9
TraesCS3A01G442300.2	Wheat	plastid	52.92	53.38
TraesCS3D01G435000.1	Wheat	plastid	52.58	53.03
GSMUA_Achr9P01070_001	Banana	cytosol	17.01	51.56
GSMUA_Achr9P01060_001	Banana	plastid	34.02	51.16
HORVU3Hr1G096450.1	Barley	plastid	52.75	51.0
Bra008842.1-P	Field mustard	nucleus, plastid	44.67	48.24
Bra013860.1-P	Field mustard	nucleus, plastid	45.36	37.82
Zm00001d049273_P001	Maize	nucleus	36.43	29.65
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	36.77	29.64
Bra039472.1-P	Field mustard	plastid	39.18	29.16
TraesCS4D01G120700.1	Wheat	nucleus	36.94	28.78
Os11t0520500-00	Rice	plasma membrane	33.33	28.03
TraesCS4A01G192600.1	Wheat	nucleus	37.11	27.84
TraesCS4B01G122700.1	Wheat	nucleus	36.77	27.44
EES08547	Sorghum	nucleus	37.29	26.14

Protein Annotations

MapMan:35.1	EnsemblPlantsGene:Bra018031	EnsemblPlants:Bra018031.1	EnsemblPlants:Bra018031.1-P	ncoils:Coil	GO:GO:0000911
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0007049
GO:GO:0008150	GO:GO:0009825	GO:GO:0009987	GO:GO:0016020	GO:GO:0016049	GO:GO:0030136
GO:GO:0040007	UniProt:M4DNE4	PANTHER:PTHR31762	PANTHER:PTHR31762:SF4	UniParc:UPI000253F299	SEG:seg

Description

AT3G48860 (E=7e-226) | unknown protein

Coordinates

chrA06:-:9627252..9631409

Molecular Weight (calculated)

64373.3 Da

IEP (calculated)

5.675

GRAVY (calculated)

-0.704

Length

582 amino acids

Sequence
(BLAST)

001: MDRRRAGSPV YGRQWSDTSN STESSSPTMS PAHRKQLGGV GGFSTAKRSQ NVAAKAAAQR LAKVMALQNK DNGDEDEEDE DEDLSLRFAP ASLKPARHAP
101: SSLSSTGSNN SNGDSKPPAV SFALRNRSPS PALGRNFVEQ VPSVRSASAG RPSISTRSTT PTPNLMPPSR VAVKAPSAIP PLDPPTRNRD KRFFADLPSV
201: NSKEKGDQRE ASALRDELDM LQEENEIVLE KLRRAEEKKA EAEARAKELE KQVASLGEGV SLEAKLLSRK EAALRQREAT LNAAKQKNNG KDDVLVSLRS
301: ELESLKDEAT TAAERLQEAE SEAKSLRTMT QRMILTQDEM EEVVLKRCWL ARYWGLAVQY DIFADIALSR HEHWSALAPL PFELVTSAAQ KAKDLSWDKG
401: SSKFCFSGND RNRAARDLSD LTGEGNIESM LSVEMGLREL ASLKVEDAIV LAFAQQRKPS LIRQTVSDHK GHGESRFVDA YELGEAEQED VAFKQAWLMY
501: FWGRAKLLGV EEDIAEERVQ LWISRSNGKS TTSHDSLDVE RGLIELRKLG IEQQLWEASR REIDQLPSPT SSPSNHDLDA DP

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.