Factsheet for Zm00001d049273_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08547	Sorghum	nucleus	70.35	60.6
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	60.98	60.39
Os11t0520500-00	Rice	plasma membrane	56.92	58.81
TraesCS4D01G120700.1	Wheat	nucleus	59.58	57.03
TraesCS4B01G122700.1	Wheat	nucleus	62.1	56.92
TraesCS4A01G192600.1	Wheat	nucleus	61.68	56.83
CDY64711	Canola	cytosol	20.84	51.03
CDX68503	Canola	nucleus	5.17	48.05
GSMUA_Achr9P01070_001	Banana	cytosol	12.59	46.88
KRG93140	Soybean	plastid	32.31	43.83
KRH36369	Soybean	nucleus, plastid	31.89	43.1
KRH63847	Soybean	endoplasmic reticulum, nucleus	32.87	40.8
KRH54118	Soybean	endoplasmic reticulum	32.87	40.8
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	32.03	40.11
VIT_01s0244g00070.t01	Wine grape	nucleus, plastid	30.63	39.6
Solyc03g118390.2.1	Tomato	nucleus	30.91	38.98
CDY09779	Canola	nucleus, plastid	28.81	38.29
AT5G13260.1	Thale cress	plastid	28.53	37.99
CDX69654	Canola	nucleus, plastid	28.67	37.89
CDY05877	Canola	nucleus, plastid	29.65	37.39
Bra008842.1-P	Field mustard	nucleus, plastid	27.97	37.11
AT3G48860.2	Thale cress	nucleus	29.93	37.09
CDX88044	Canola	mitochondrion	27.97	36.9
CDX80382	Canola	mitochondrion	27.69	36.46
Bra018031.1-P	Field mustard	mitochondrion	29.65	36.43
Bra009703.1-P	Field mustard	mitochondrion	24.9	35.32
AT5G23700.3	Thale cress	mitochondrion, plastid	27.83	34.43
Solyc05g023770.2.1	Tomato	plastid	18.18	32.75
CDY03383	Canola	nucleus, plastid	28.11	30.78
CDY34338	Canola	nucleus, plastid	27.97	30.72
Bra013860.1-P	Field mustard	nucleus, plastid	27.83	28.51
AT4G25070.2	Thale cress	plastid	28.81	26.86
Zm00001d024833_P001	Maize	mitochondrion	9.79	20.59
CDY70607	Canola	nucleus	6.57	20.09

Protein Annotations

EnsemblPlants:Zm00001d049273_P001	EnsemblPlants:Zm00001d049273_T001	EnsemblPlantsGene:Zm00001d049273	EntrezGene:103652949	ncoils:Coil	PANTHER:PTHR31762
PANTHER:PTHR31762:SF7	ProteinID:AQK49973.1	SEG:seg	UniParc:UPI000220FB68	UniProt:K7UAH5	MapMan:22.5.7.1.2

Description

Coiled-coil domain-containing protein SCD2

Coordinates

chr4:+:23998240..24004490

Molecular Weight (calculated)

78204.3 Da

IEP (calculated)

5.937

GRAVY (calculated)

-0.746

Length

715 amino acids

Sequence
(BLAST)

001: MDAPRGGHAR RPGPSGEAAN QRRAAAAQAM ARMEEMMLAH AGAAGEFSII LDAPLPSLQQ YRRHPTPPSG APSASSANSS PFRRGGGGGR DEGVPARLRR
101: DGSGHDALGD PVTAARASRH GAADGTGAGA ARPRAGGARR EREQEKPVEA PVRLTDPRSV RRPVSRGETP PPTAAEVRRV ADQEEEEETP LKLLARGGRS
201: SSAARPAEAS QASETVPTAA RPSSRRSRRD VGAKQGLSEV TSNVDSDVES VGRRSSRGSE DGGDERVSLP MPLAAVVARD RSRSNSPAIS RNGVDSAAAN
301: RTPSTGRSTF APPVGVSVRP LQAVEIPNGT PRDRRAVYPD PTFAQSTRSR DSHDSSTLTE ELEMLKDENV NLLEKLGLAE EKLRQSEART TELEKQVANL
401: GNGLSMEVKL MKRREEMLVR KEQEIRKALI SKNGKSEELT TLQQQLQSAR EEASAAVKKL KEAESETQEL HTMTRRMILS KEEMEEVVMK RCWLARYWGL
501: AVQYGIYPDI SMSKHEYWSS LAPLPFEYVT SAGQRAKDGS EAEGNGLEDV DKLVHDLTVT AGEGNVETML AVDKGLQELA FLKVEDAVLF ALAQHHRTNV
601: AGAADPDIKS SGDEKFTEAF DLSKEEEEDV QFKQAWLIFF WRRAKTNNVE EDIAEERLHM WIDRHGQQPT SHDAVDVEQG IHELRKLGIE QLLWELSRHE
701: ANLAKDSPSD VEDLT

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.