CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34338	Canola	nucleus, plastid	80.7	80.95
Bra013860.1-P	Field mustard	nucleus, plastid	75.04	70.2
CDY64711	Canola	cytosol	24.04	53.77
AT4G25070.2	Thale cress	plastid	58.5	49.8
CDX68503	Canola	nucleus	5.82	49.35
KRH63847	Soybean	endoplasmic reticulum, nucleus	40.43	45.83
GSMUA_Achr9P01070_001	Banana	cytosol	13.48	45.83
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	39.97	45.71
CDY05877	Canola	nucleus, plastid	39.66	45.68
CDX88044	Canola	mitochondrion	37.83	45.57
KRH54118	Soybean	endoplasmic reticulum	39.97	45.31
CDX80382	Canola	mitochondrion	37.67	45.3
GSMUA_Achr4P00070_001	Banana	plastid	35.83	44.91
Solyc03g118390.2.1	Tomato	nucleus	38.44	44.27
CDY09779	Canola	nucleus, plastid	35.53	43.12
CDX69654	Canola	nucleus, plastid	35.68	43.07
Os01t0928100-01	Rice	plasma membrane	37.37	42.81
EES04143	Sorghum	plastid	36.45	42.35
TraesCS3A01G442300.2	Wheat	plastid	36.14	40.9
TraesCS3D01G435000.1	Wheat	plastid	36.14	40.9
TraesCS3B01G476100.1	Wheat	plastid	35.99	40.73
HORVU3Hr1G096450.1	Barley	plastid	36.45	39.53
GSMUA_Achr9P01060_001	Banana	plastid	22.66	38.24
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	32.31	29.22
Zm00001d049273_P001	Maize	nucleus	30.78	28.11
Os11t0520500-00	Rice	plasma membrane	29.71	28.03
TraesCS4D01G120700.1	Wheat	nucleus	32.01	27.98
CDY70607	Canola	nucleus	9.95	27.78
TraesCS4A01G192600.1	Wheat	nucleus	32.47	27.32
TraesCS4B01G122700.1	Wheat	nucleus	32.62	27.31
CDY27806	Canola	plastid	30.63	25.61
CDY41922	Canola	plastid	31.24	25.56
EES08547	Sorghum	nucleus	32.16	25.3

Protein Annotations

EnsemblPlants:CDY03383	EnsemblPlantsGene:GSBRNA2T00116017001	ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF4	ProteinID:CDY03383
ProteinID:CDY03383.1	SEG:seg	UniParc:UPI0004EE3DA7	MapMan:22.5.7.1.2	:	:

Description

BnaC01g16990D

Coordinates

chrLK031943:-:98981..102771

Molecular Weight (calculated)

74127.6 Da

IEP (calculated)

5.011

GRAVY (calculated)

-0.832

Length

653 amino acids

Sequence
(BLAST)

001: MARRRWEASD NVGSANSSPA MSPSHRMSNN GGGGISGRST LRKQNAAELL AKVMEQRDYD YDYDDEDEDL YQVHLPPLSR DRRRDDKRVG KGTVRGKPAP
101: AKRPVLIPPK FDDDESDGDE PVKIPQKNVR VPATRAPANV RVSAVRPVLL PSKFDDESDG DEVAADLPRN QVKIPEENAS VQKEAPAVKP IALSPPKFDD
201: ELDGDEITAN VVKNQAEEIP QKNASPALRV RVPAYSRRNP MEDSEQNADR KVNVQFDVPP AKQSEAQLKY KKSFRFSSAD ILAPNQEEDD REASALRDEL
301: DMLQEENDNI LYKLQRAEEK REAAEARARE LERQIASLGE GANFDVKLLK RKEAALRQRE AALRAAEQKR DGRHKETDAF CAELQSLKEE TEKAVEQLQD
401: AQAETKSLRT MIHRTILTHE EMEEVVLKRC WLARYWELAV QHGIYKDIAP SRHEHWSALA PLPFEVVISA AQKPEDSWQT DGSDRTWSKV VSKFSDANGD
501: GNIESMLAVE TGLREIASLK VEDAIMLVFA GFRQKHVVRQ SDTDPRVQGE PKFAEAFELS HDEKQDILFK EAWLMYYWKR AKIHSVESDI AEDRLKFWIS
601: RIAEQPTSHD AVDVERGMRE LRKLGIEQQL WEASRAQLTD STFPLSVSDY CDE

Best Arabidopsis Sequence Match ( AT4G25070.2 )
(BLAST)

001: MARRPGTSAS SSPTMSPSHR MSGGGGGISG KSTLRKQNAA ELLAKVMEKR EYDYDYDDED GGEDLYQVHL PPLTQSRRRD DKRIGKGSVN EKKAPAKKPI
101: ILPAPKFDDE SEDDETRANF RPNPVIIPKK NAREPRKAPA TKPVVLPPPK FSNVRRIPVE ISGRNARGSK EASTVKQVVS TPKFDDEYDS DEITEDVPRN
201: PVEIRGPVRG KVAPAVKPVV VLPTKFDDEY DSDEITEDVP RNPVEIRGTV RGKVAPAVKP VVVLPTKFDD EYDSDEITAD VSRNPVEVRD PVRGKLAPVV
301: KPVVLPTKFD DEYDSDEIAA DVSRKAVEIP QKNEKSTLRV RVPAYSRRNP LEEFEQNGED KQNVQCDVPA KQSEAQLKYK KSFRYHPANI LAPNNSNQQE
401: DDREASALRD ELDMLQEEND NIMDKLQRAE ERREAAEARA KELEKQVASL GEGANFDVKL LKRKEAALRQ REAALRAAEQ KRDGRNRETN ALSSEFQSLK
501: DEAEKSTEQL QEVEAEIKSL RTMIHRTILS QEEMEEVVLK RCWLARYWEL AVQHGICEDI STSRYEHWSA LAPLPSEVVL SAAQKSEDSW QTGGSDRTWS
601: KVISNFSDLN GEGNIESMLA VETGLREIAS LKVEDAVMLA LSRYRQTNVA RQAVTDPRVQ GEPKFSETFE LSHDEQQDIL FKEAWLLYFW KRAKIHGVES
701: DIAEERLQFW INRLGQHSSS HDAIDVERGM RELRKLGIEQ QLWETSRKEL IDSSFLPSYS VSDYNDE

Arabidopsis Description

Caldesmon-like protein [Source:UniProtKB/TrEMBL;Acc:A0MFT2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.