Factsheet for TraesCS4A01G192600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G122700.1	Wheat	nucleus	92.78	92.31
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	83.63	89.89
TraesCS4D01G120700.1	Wheat	nucleus	85.7	89.02
Zm00001d049273_P001	Maize	nucleus	56.83	61.68
Os11t0520500-00	Rice	plasma membrane	52.71	59.1
CDY64711	Canola	cytosol	19.72	52.4
EES08547	Sorghum	nucleus	54.9	51.33
GSMUA_Achr9P01070_001	Banana	cytosol	12.37	50.0
CDX68503	Canola	nucleus	4.9	49.35
KRG93140	Soybean	plastid	30.93	45.54
KRH36369	Soybean	nucleus, plastid	30.41	44.61
TraesCS1A01G102200.1	Wheat	nucleus, plastid	20.88	42.41
KRH63847	Soybean	endoplasmic reticulum, nucleus	31.19	42.01
KRH54118	Soybean	endoplasmic reticulum	31.19	42.01
VIT_01s0244g00070.t01	Wine grape	nucleus, plastid	29.77	41.77
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	29.9	40.63
TraesCS3A01G442300.2	Wheat	plastid	30.15	40.55
CDY09779	Canola	nucleus, plastid	28.09	40.52
AT5G13260.1	Thale cress	plastid	27.84	40.22
CDX69654	Canola	nucleus, plastid	27.96	40.11
Bra008842.1-P	Field mustard	nucleus, plastid	27.45	39.52
Solyc03g118390.2.1	Tomato	nucleus	28.74	39.33
CDY05877	Canola	nucleus, plastid	27.71	37.92
Bra018031.1-P	Field mustard	mitochondrion	27.84	37.11
AT3G48860.2	Thale cress	nucleus	27.58	37.09
CDX80382	Canola	mitochondrion	25.52	36.46
CDX88044	Canola	mitochondrion	25.26	36.16
Bra009703.1-P	Field mustard	mitochondrion	23.07	35.52
Solyc05g023770.2.1	Tomato	plastid	17.91	35.01
AT5G23700.3	Thale cress	mitochondrion, plastid	25.64	34.43
CDY34338	Canola	nucleus, plastid	27.32	32.57
CDY03383	Canola	nucleus, plastid	27.32	32.47
Bra013860.1-P	Field mustard	nucleus, plastid	27.06	30.09
AT4G25070.2	Thale cress	plastid	27.58	27.9
CDY70607	Canola	nucleus	6.19	20.51

Protein Annotations

EnsemblPlants:TraesCS4A01G192600.1	EnsemblPlantsGene:TraesCS4A01G192600	ncoils:Coil	PANTHER:PTHR31762	PANTHER:PTHR31762:SF7	SEG:seg
MapMan:22.5.7.1.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:473496793..473508086

Molecular Weight (calculated)

85315.7 Da

IEP (calculated)

4.940

GRAVY (calculated)

-0.732

Length

776 amino acids

Sequence
(BLAST)

001: MDAGRASGVG PARRPRPAAA ASDPRRAAAA REAMLRMEEV MMAHAGAAGE FSMIIEAPLP NLQRYRRNAT PPAAPSSDSP SRRRGGPHDP GARDDVPTRL
101: RREGSVTEDV GNARGVRGGE DMGYADDARS RRGTGDARGA RPASTRGREE ESEAPVRMRD PRRESGRLSA PPGRVVEAQP DVASAVEEET PLQQLSRGAR
201: SSSADRRVEA APEAEAMAAR PSSRGSRREG SRDAVVNPIV TEPAVEALAA RPPSRRSRRD GSGDDAVNPI VAEPAVEVLA VRPPSRRSRR EGSGEAVVNA
301: IVAEPELEAD VESVGWGSSR GSEDGGEEPV ALPKPLESIL TGGRSRSNSP AISRNGVDSG VANRAQSTGR SSFVPPVGAN VRPLQAVEVP NGTPRERRTI
401: YPDPTFAQSG RSRDSHDSST LTEEVEMLKD ENVNLLEKLG LAEEKFRQSE ARTRELEKQV ANLGDGLSME VKLMKRREEM LVRKEQEIRK ALISKNDKSE
501: EITTLQQQLQ SASEKAAVAE RKLNEAESET KALRTMTQRM ILSKEEMEEV VMKRCWLARY WGLAVQYGIY PDISMSKYEY WSSFAPLPLE YVTSAGLRAK
601: DGGSNDLEET DMLVHDLTVT AGEGNIETML AVDKGLKELA FLKVEDAVLI ALAQHHRPNV AELSDPDIKS SGDEKFTEAF DLSKEEEEDV LFKQAWLMYF
701: WRRAKTHNVE EDIAEERLQM WVDRHGQQPT SHDAVDVEQG IHELRKLGIE QLLWEFSRQE VNVAEGELSD PEDDLT

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.