CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68503	Canola	nucleus	21.92	83.12
GSMUA_Achr9P01070_001	Banana	cytosol	34.25	52.08
CDY05877	Canola	nucleus, plastid	94.86	48.85
Bra018031.1-P	Field mustard	mitochondrion	94.86	47.59
AT3G48860.2	Thale cress	nucleus	80.48	40.73
CDX88044	Canola	mitochondrion	64.04	34.5
CDX80382	Canola	mitochondrion	64.04	34.44
KRH63847	Soybean	endoplasmic reticulum, nucleus	64.38	32.64
VIT_17s0000g00390.t01	Wine grape	mitochondrion, plastid	63.7	32.57
KRH54118	Soybean	endoplasmic reticulum	63.7	32.29
Solyc03g118390.2.1	Tomato	nucleus	62.67	32.28
GSMUA_Achr4P00070_001	Banana	plastid	54.79	30.71
EES04143	Sorghum	plastid	57.19	29.72
Os01t0928100-01	Rice	plasma membrane	57.88	29.65
TraesCS3A01G442300.2	Wheat	plastid	56.51	28.6
TraesCS3D01G435000.1	Wheat	plastid	56.16	28.42
TraesCS3B01G476100.1	Wheat	plastid	56.16	28.42
CDY09779	Canola	nucleus, plastid	52.05	28.25
CDX69654	Canola	nucleus, plastid	52.05	28.1
HORVU3Hr1G096450.1	Barley	plastid	56.16	27.24
CDY34338	Canola	nucleus, plastid	54.11	24.27
CDY03383	Canola	nucleus, plastid	53.77	24.04
HORVU4Hr1G023390.10	Barley	cytosol, nucleus	51.71	20.91
Zm00001d049273_P001	Maize	nucleus	51.03	20.84
TraesCS4D01G120700.1	Wheat	nucleus	52.4	20.48
TraesCS4A01G192600.1	Wheat	nucleus	52.4	19.72
TraesCS4B01G122700.1	Wheat	nucleus	52.4	19.62
Os11t0520500-00	Rice	plasma membrane	45.89	19.36
EES08547	Sorghum	nucleus	51.71	18.19
CDY27806	Canola	plastid	46.23	17.29
CDY41922	Canola	plastid	46.92	17.17
GSMUA_Achr9P01060_001	Banana	plastid	21.23	16.02
CDY70607	Canola	nucleus	2.74	3.42

Protein Annotations

EnsemblPlants:CDY64711	EnsemblPlantsGene:GSBRNA2T00042585001	ncoils:Coil	PANTHER:PTHR31762	ProteinID:CDY64711	ProteinID:CDY64711.1
UniParc:UPI0004EDFEA6	UniProt:A0A078JGC6	MapMan:22.5.7.1.2	:	:	:

Description

BnaA06g38700DBnaA06g38700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGC6]

Coordinates

chrLK034526:-:27098..29289

Molecular Weight (calculated)

33220.3 Da

IEP (calculated)

4.875

GRAVY (calculated)

-0.496

Length

292 amino acids

Sequence
(BLAST)

001: MMKPCLIRLC YVQSLKDEAT TAAERLQEAE SEAKSLRTMT QRMILTQDEM EEVVLKRCWL ARYWGLAVQY DIFADIALSR HEHWSSLAPL PFELVTSAAQ
101: KAKDLSWDKG SSKFRFSGND RNRAARDLSD LTGEGNIESM LSVEMGLREL ASLKVEDAIV LAFAQQRKPS LIRQTVSDHK GHGESRFVDA YELGEAEQED
201: VAFKQAWLMY FWGRAKLLGV EEDIAEERVQ LWISRSNGKS TTSHDSLDVE RGLIELRKLG IEQQLWEASR REIDQLPSPT SSPSNHDLDA DP

Best Arabidopsis Sequence Match ( AT3G48860.2 )
(BLAST)

001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS

Arabidopsis Description

SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.