Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G435000.1 | Wheat | plastid | 92.86 | 96.88 |
| TraesCS3A01G442300.2 | Wheat | plastid | 92.36 | 96.36 |
| TraesCS3B01G476100.1 | Wheat | plastid | 90.03 | 93.93 |
| EES04143 | Sorghum | plastid | 80.9 | 86.65 |
| Os01t0928100-01 | Rice | plasma membrane | 78.74 | 83.16 |
| GSMUA_Achr4P00070_001 | Banana | plastid | 57.48 | 66.41 |
| VIT_01s0244g00070.t01 | Wine grape | nucleus, plastid | 54.49 | 59.31 |
| VIT_17s0000g00390.t01 | Wine grape | mitochondrion, plastid | 55.65 | 58.67 |
| KRH63847 | Soybean | endoplasmic reticulum, nucleus | 55.65 | 58.16 |
| KRG93140 | Soybean | plastid | 50.83 | 58.06 |
| KRH54118 | Soybean | endoplasmic reticulum | 55.48 | 57.99 |
| KRH36369 | Soybean | nucleus, plastid | 50.33 | 57.28 |
| CDY64711 | Canola | cytosol | 27.24 | 56.16 |
| CDY05877 | Canola | nucleus, plastid | 51.0 | 54.14 |
| Solyc03g118390.2.1 | Tomato | nucleus | 50.66 | 53.79 |
| AT5G13260.1 | Thale cress | plastid | 47.84 | 53.63 |
| AT3G48860.2 | Thale cress | nucleus | 51.0 | 53.21 |
| Bra018031.1-P | Field mustard | mitochondrion | 51.0 | 52.75 |
| CDY09779 | Canola | nucleus, plastid | 46.51 | 52.04 |
| CDX69654 | Canola | nucleus, plastid | 46.51 | 51.76 |
| Solyc05g023770.2.1 | Tomato | plastid | 34.05 | 51.64 |
| Bra009703.1-P | Field mustard | mitochondrion | 42.52 | 50.79 |
| AT5G23700.3 | Thale cress | mitochondrion, plastid | 48.34 | 50.35 |
| Bra008842.1-P | Field mustard | nucleus, plastid | 44.85 | 50.09 |
| CDX80382 | Canola | mitochondrion | 45.18 | 50.09 |
| CDX88044 | Canola | mitochondrion | 44.85 | 49.82 |
| CDX68503 | Canola | nucleus | 6.31 | 49.35 |
| CDY70607 | Canola | nucleus | 14.62 | 37.61 |
| CDY34338 | Canola | nucleus, plastid | 39.87 | 36.87 |
| CDY03383 | Canola | nucleus, plastid | 39.53 | 36.45 |
| Bra013860.1-P | Field mustard | nucleus, plastid | 39.37 | 33.95 |
| HORVU4Hr1G023390.10 | Barley | cytosol, nucleus | 38.87 | 32.41 |
| AT4G25070.2 | Thale cress | plastid | 40.2 | 31.55 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G096450.1 | EnsemblPlantsGene:HORVU3Hr1G096450 | ncoils:Coil | PANTHER:PTHR31762 | PANTHER:PTHR31762:SF4 | SEG:seg |
| SUPFAM:SSF57997 | UniParc:UPI000B47B81B | UniProt:A0A287MET4 | MapMan:22.5.7.1.2 | : | : |
Description
No Description!
Coordinates
chrchr3H:+:653279641..653287627
Molecular Weight (calculated)
65298.6 Da
IEP (calculated)
5.875
GRAVY (calculated)
-0.567
Length
602 amino acids
Sequence
(BLAST)
(BLAST)
001: LAISASCCRA ASPPHRALPA AQIPPRSGEP AMDRLRAGSP VYGRQRSGSS TGSTSPGGVS PSHHRSSSTS SAASLPGAVA GVGGISNVRR TQNVAARAAA
101: ARLAQVMASQ SAAAAAGDDD DDDDYANDHP PPPPARFGSG ARSGHGSNGV SLLGRTARSP SPALGRNIVE PPPTVRSASA GRTAAIAARP TATVVPPIKT
201: NTTIRTPSPI PPVAVESPVE RPRQKRFDTA PLNSRESAPR RESSTLQDEL DMLQEENESV LDKLRRAEEK CEEAEARAKE LEKQVAALGD GVSLEARLLS
301: RKEAALKQRE AALKAAREST DGRNGEVSTI KHELESAKEE VAAVMDQLKE AESETKALRS MTQRMILTQE EMEEVVLKRC WLARYWGLAV QYGVYPEIAV
401: SKHEHWSSLA PLPLEVVLSA GQKAIKEEPR KQGEDDAQRR NRLVREMSDV MGEGNIESML SVEMGLRELS SLKVEDAVVV ALGQHRRPSI VRQFTSDYKS
501: PGEPKFLEAF DLSNEEAEDV SFKHAWLIYF WRRAKTHGIE EDIADERLQF WIARNAVAPN SHDAIDVERG LTELRKLGIE QQLWEGTRAD IDEAASAAME
601: DE
101: ARLAQVMASQ SAAAAAGDDD DDDDYANDHP PPPPARFGSG ARSGHGSNGV SLLGRTARSP SPALGRNIVE PPPTVRSASA GRTAAIAARP TATVVPPIKT
201: NTTIRTPSPI PPVAVESPVE RPRQKRFDTA PLNSRESAPR RESSTLQDEL DMLQEENESV LDKLRRAEEK CEEAEARAKE LEKQVAALGD GVSLEARLLS
301: RKEAALKQRE AALKAAREST DGRNGEVSTI KHELESAKEE VAAVMDQLKE AESETKALRS MTQRMILTQE EMEEVVLKRC WLARYWGLAV QYGVYPEIAV
401: SKHEHWSSLA PLPLEVVLSA GQKAIKEEPR KQGEDDAQRR NRLVREMSDV MGEGNIESML SVEMGLRELS SLKVEDAVVV ALGQHRRPSI VRQFTSDYKS
501: PGEPKFLEAF DLSNEEAEDV SFKHAWLIYF WRRAKTHGIE EDIADERLQF WIARNAVAPN SHDAIDVERG LTELRKLGIE QQLWEGTRAD IDEAASAAME
601: DE
001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS
Arabidopsis Description
SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.