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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, mitochondrion

Predictor Summary:
  • nucleus 3
  • plastid 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:mitochondrion
Plant-mPloc:nucleus
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX80382 Canola mitochondrion 69.9 74.4
Bra009703.1-P Field mustard mitochondrion 63.84 73.21
CDX88044 Canola mitochondrion 67.3 71.77
AT3G48860.2 Thale cress nucleus 68.69 68.8
KRH63847 Soybean endoplasmic reticulum, nucleus 58.13 58.33
KRH54118 Soybean endoplasmic reticulum 58.13 58.33
GSMUA_Achr4P00070_001 Banana plastid 52.08 57.77
VIT_17s0000g00390.t01 Wine grape mitochondrion, plastid 56.92 57.62
EES04143 Sorghum plastid 53.81 55.34
Solyc03g118390.2.1 Tomato nucleus 53.81 54.85
Os01t0928100-01 Rice plasma membrane 52.77 53.51
TraesCS3B01G476100.1 Wheat plastid 50.69 50.78
TraesCS3A01G442300.2 Wheat plastid 50.17 50.26
TraesCS3D01G435000.1 Wheat plastid 50.17 50.26
GSMUA_Achr9P01060_001 Banana plastid 33.39 49.87
HORVU3Hr1G096450.1 Barley plastid 50.35 48.34
AT5G13260.1 Thale cress plastid 44.81 48.23
GSMUA_Achr9P01070_001 Banana cytosol 15.74 47.4
AT4G25070.2 Thale cress plastid 44.98 33.9
Zm00001d049273_P001 Maize nucleus 34.43 27.83
HORVU4Hr1G023390.10 Barley cytosol, nucleus 34.43 27.56
Os11t0520500-00 Rice plasma membrane 32.87 27.46
TraesCS4D01G120700.1 Wheat nucleus 35.12 27.18
AT4G08630.1 Thale cress plastid 37.02 26.75
TraesCS4A01G192600.1 Wheat nucleus 34.43 25.64
TraesCS4B01G122700.1 Wheat nucleus 34.26 25.38
EES08547 Sorghum nucleus 34.95 24.34
Protein Annotations
ArrayExpress:AT5G23700EnsemblPlants:AT5G23700.3EnsemblPlantsGene:AT5G23700EntrezGene:832435ncoils:CoilPANTHER:PTHR31762
PANTHER:PTHR31762:SF4ProteinID:ANM68837.1RefSeq:AT5G23700RefSeq:AT5G23700-TAIR-GRefSeq:NP_001330556.1SEG:seg
TAIR:AT5G23700Unigene:At.54960UniParc:UPI000849003BUniProt:A0A1P8BB69MapMan:22.5.7.1.2:
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G23700]
Coordinates
chr5:+:7992777..7996434
Molecular Weight (calculated)
64673.0 Da
IEP (calculated)
6.406
GRAVY (calculated)
-0.709
Length
578 amino acids
Sequence
(BLAST)
001: MDLRRPSSPV YGRQWSRSSN GTESRSPSMS PAHRNQIGGV GGLSTVKRTQ NVATKAAAQR LAKVMALQNK DNEEDDDDDD HEFKFAPPSS GPINGSFARR
101: NRSHSPAIGR NITEQVTSVR SSSTGRPSTF SRSSTPNASP LWMPPKASLK PPVIIPPIDH SFKDRDQRYF GDVPRLVNSR DKGYQREASA LRDEVDMLQE
201: ENEIVLEKLH RAEEMREAAE ARARELEKQV ASLGEGVSLE AKLLSRKEAA LRQREAALKA ANEKKDGKKE EVVSLRSEIQ DEAETAAECL QEAESEAKAL
301: RIMTQRMVLT QDEMEEVALK RCWLARYWGL AVQHGICADI APSRHEKWSA LAPLPFELVI SAAQKTKELS RDKGGSDQSK TARFLSDLPG EGNIESMLSV
401: EMGLRELASL KVEDAVMLAF AQKRTPSLVR QDSKGHGELS FVESYGKRRE SKHAQYIISA VKLDEILTML SHFSNAEIKE GEQEDVAFKQ AWLMYFWGRA
501: KLHSVEEDIA DERFQFWTSR SEGKSPTSQD AVDVERGLLE LRKLGVEQQL WEACRKETDQ LLPSSSPTST LSNHNLDS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.