Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41922 | Canola | plastid | 78.38 | 78.57 |
| VIT_14s0030g00770.t01 | Wine grape | cytosol | 4.88 | 75.0 |
| CDY27806 | Canola | plastid | 72.5 | 74.26 |
| Bra039472.1-P | Field mustard | plastid | 67.0 | 68.54 |
| GSMUA_Achr2P01550_001 | Banana | cytosol | 24.88 | 53.64 |
| Solyc10g037930.1.1 | Tomato | cytosol | 9.88 | 49.07 |
| TraesCS1A01G102200.1 | Wheat | nucleus, plastid | 22.38 | 46.86 |
| PGSC0003DMT400067804 | Potato | cytosol | 10.88 | 39.91 |
| AT3G48860.2 | Thale cress | nucleus | 27.88 | 38.65 |
| AT5G13260.1 | Thale cress | plastid | 25.88 | 38.55 |
| KRG96906 | Soybean | nucleus, plastid | 30.25 | 37.87 |
| KRH68645 | Soybean | nucleus, plastid | 31.0 | 37.8 |
| AT5G23700.3 | Thale cress | mitochondrion, plastid | 26.75 | 37.02 |
| TraesCS1B01G112600.1 | Wheat | plastid | 24.75 | 36.94 |
| TraesCS1D01G093800.1 | Wheat | plastid | 24.75 | 36.94 |
| KXG21299 | Sorghum | mitochondrion | 24.25 | 33.62 |
| AT4G25070.2 | Thale cress | plastid | 26.25 | 27.38 |
| Zm00001d024833_P001 | Maize | mitochondrion | 11.12 | 26.18 |
Protein Annotations
| ArrayExpress:AT4G08630 | EnsemblPlants:AT4G08630.1 | EnsemblPlantsGene:AT4G08630 | EntrezGene:826428 | GO:GO:0008150 | ncoils:Coil |
| PANTHER:PTHR31762 | PANTHER:PTHR31762:SF3 | ProteinID:AEE82665.2 | RefSeq:AT4G08630 | RefSeq:AT4G08630-TAIR-G | RefSeq:NP_001319885.1 |
| SEG:seg | TAIR:AT4G08630 | TAIR:AT4G08630.1 | UniParc:UPI00084959D0 | UniProt:F4JIB6 | MapMan:22.5.7.1.2 |
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 1487 Blast hits to 747 proteins in 184 species: Archae - 0; Bacteria - 56; Metazoa - 305; Fungi - 197; Plants - 180; Viruses - 3; Other Eukaryotes - /.../source: NCBI BLink). [Source:TAIR;Acc:AT4G08630]
Coordinates
chr4:-:5506817..5512046
Molecular Weight (calculated)
88331.0 Da
IEP (calculated)
5.715
GRAVY (calculated)
-0.800
Length
800 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNTRPIHVR NKSTEPGTPS SPMMTSPLMH RHTRSGSNAG PASNAKKAQT KAAAQRLAAV MSNQTGDEED SDEDLSFDYN AIGTGSIGLA AGRSHPSRSP
101: VIRNPMARRQ QMATPQLVDE DNEDDDFSVD VTSSRPSIGL PGGRAMRPQS PVMTKIAPPR RTQPTNEGNK NDGNDDDDVV SIDYTIGRPS IGLGSGRAMR
201: PQSSMNKTQP QGRPVMAAHQ RADEDNEDDE TPYVYTSSIP SVGLPGGRAA RSRSPLTKNP PLRHPHAVAQ PPSNGESDVD YDESYTSGMP SIGLAGGRSM
301: RPRTPLSIRT KEQPQTGLPT SGSRSSLYED STESSAMSTL THPSQTTNQV EQSPSARSAI SNKSSQSLSA MDQPPSARSS FNGRPIRTAP LMPSSVPISL
401: KPVTPAFQSN TPTNLRKDKS RFSMDLGSSG NLRELGSQRS TSALQDEVDM LQEENESLLE KLRLAEDKCE EADARAKQLE KQVEILGEGV TMDARLLSRK
501: EAALQQREAA LRIASQNHGG KREDVSALHT EAEIAREEAA SSLDQLHEVE LELNSLKTVT KRLILTQEEM EEVVLKRCWL SRYWGLCVRH GIQPDIAGGK
601: HEYWSSFAPL PLEIVLSAGQ RARDGVSQSN NTYGEREKSL QNLQETSGEG NLENMIWVEK GLRELASLKV QEAVAFVMAQ NRRNTSSKFF VSDEVKMPMD
701: GQFEAFELSD EEVEDVNFKQ AWLSYFWRRA KNHEIESDLV DERLQYWINQ GTRSATSQDA VDVERGLMEL RKLNIESQLW QKSRKGLDHE SNPSHLELSF
101: VIRNPMARRQ QMATPQLVDE DNEDDDFSVD VTSSRPSIGL PGGRAMRPQS PVMTKIAPPR RTQPTNEGNK NDGNDDDDVV SIDYTIGRPS IGLGSGRAMR
201: PQSSMNKTQP QGRPVMAAHQ RADEDNEDDE TPYVYTSSIP SVGLPGGRAA RSRSPLTKNP PLRHPHAVAQ PPSNGESDVD YDESYTSGMP SIGLAGGRSM
301: RPRTPLSIRT KEQPQTGLPT SGSRSSLYED STESSAMSTL THPSQTTNQV EQSPSARSAI SNKSSQSLSA MDQPPSARSS FNGRPIRTAP LMPSSVPISL
401: KPVTPAFQSN TPTNLRKDKS RFSMDLGSSG NLRELGSQRS TSALQDEVDM LQEENESLLE KLRLAEDKCE EADARAKQLE KQVEILGEGV TMDARLLSRK
501: EAALQQREAA LRIASQNHGG KREDVSALHT EAEIAREEAA SSLDQLHEVE LELNSLKTVT KRLILTQEEM EEVVLKRCWL SRYWGLCVRH GIQPDIAGGK
601: HEYWSSFAPL PLEIVLSAGQ RARDGVSQSN NTYGEREKSL QNLQETSGEG NLENMIWVEK GLRELASLKV QEAVAFVMAQ NRRNTSSKFF VSDEVKMPMD
701: GQFEAFELSD EEVEDVNFKQ AWLSYFWRRA KNHEIESDLV DERLQYWINQ GTRSATSQDA VDVERGLMEL RKLNIESQLW QKSRKGLDHE SNPSHLELSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.