Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G435000.1 | Wheat | plastid | 95.15 | 95.15 |
| TraesCS3A01G442300.2 | Wheat | plastid | 94.97 | 94.97 |
| HORVU3Hr1G096450.1 | Barley | plastid | 93.93 | 90.03 |
| Os01t0928100-01 | Rice | plasma membrane | 83.71 | 84.74 |
| EES04143 | Sorghum | plastid | 82.15 | 84.34 |
| GSMUA_Achr4P00070_001 | Banana | plastid | 59.45 | 65.83 |
| VIT_01s0244g00070.t01 | Wine grape | nucleus, plastid | 55.81 | 58.23 |
| VIT_17s0000g00390.t01 | Wine grape | mitochondrion, plastid | 57.54 | 58.14 |
| KRH36369 | Soybean | nucleus, plastid | 53.21 | 58.03 |
| KRH54118 | Soybean | endoplasmic reticulum | 57.37 | 57.47 |
| KRH63847 | Soybean | endoplasmic reticulum, nucleus | 57.37 | 57.47 |
| KRG93140 | Soybean | plastid | 52.17 | 57.12 |
| CDY64711 | Canola | cytosol | 28.42 | 56.16 |
| CDY05877 | Canola | nucleus, plastid | 53.9 | 54.85 |
| Solyc03g118390.2.1 | Tomato | nucleus | 53.38 | 54.32 |
| Bra018031.1-P | Field mustard | mitochondrion | 53.9 | 53.44 |
| AT3G48860.2 | Thale cress | nucleus | 53.38 | 53.38 |
| AT5G13260.1 | Thale cress | plastid | 49.22 | 52.89 |
| CDY09779 | Canola | nucleus, plastid | 48.87 | 52.42 |
| CDX69654 | Canola | nucleus, plastid | 48.53 | 51.76 |
| Solyc05g023770.2.1 | Tomato | plastid | 35.36 | 51.39 |
| Bra009703.1-P | Field mustard | mitochondrion | 44.71 | 51.19 |
| AT5G23700.3 | Thale cress | mitochondrion, plastid | 50.78 | 50.69 |
| CDX80382 | Canola | mitochondrion | 47.49 | 50.46 |
| Bra008842.1-P | Field mustard | nucleus, plastid | 46.97 | 50.28 |
| CDX88044 | Canola | mitochondrion | 47.14 | 50.18 |
| CDX68503 | Canola | nucleus | 6.59 | 49.35 |
| TraesCS1B01G112600.1 | Wheat | plastid | 36.57 | 39.37 |
| CDY70607 | Canola | nucleus | 14.9 | 36.75 |
| CDY34338 | Canola | nucleus, plastid | 41.07 | 36.41 |
| CDY03383 | Canola | nucleus, plastid | 40.73 | 35.99 |
| Bra013860.1-P | Field mustard | nucleus, plastid | 40.55 | 33.52 |
| AT4G25070.2 | Thale cress | plastid | 41.77 | 31.42 |
| TraesCS4B01G122700.1 | Wheat | nucleus | 39.17 | 28.97 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G476100.1 | EnsemblPlantsGene:TraesCS3B01G476100 | ncoils:Coil | PANTHER:PTHR31762 | PANTHER:PTHR31762:SF4 | SEG:seg |
| SUPFAM:SSF57997 | MapMan:22.5.7.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:724933924..724941448
Molecular Weight (calculated)
62837.5 Da
IEP (calculated)
5.400
GRAVY (calculated)
-0.588
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRLRAGSPV YGRQRSGSST GSTSPGGVSP SHHRSSSTSS AASLPGAAAA GVGGISNVRR TQNVAARAAA ARLAQVMASQ SAAAAAGDDD DEDDYANDHP
101: PPPPARFGSG ARAGHGSNGV SLLGRTARSP SPALGRNIVE PPPTVRSASA GRTAAIASRP TATVVPPIKT STTIRTPSPI PPVAVESPVE RPRQKRFDTA
201: PLNSRESAPR RESSTLQDEL DMLQEENESV LDKLRRAEEK CEEAEARAKE LEKQVAALGD GVSLEARLLS RKEAALKQRE AALKAARESN DGRNGEVSTI
301: KHELESAKEE VAAVMDQLKE AESESKALRS MTQRMILTQE EMEEVVLKRC WLARYWGLAV QYGVYPEIAV SKHEHWSSLA PLPLEVVLSA GQKAIKEEPR
401: KQEFIQAGED DAQRRNRLVR EMSDVMGEGN IESMLSVEMG LRELSSLKVE DAVVVALGQH RRPSIVRQFT SDYKSPGEPK FLEAFDLSNE EAEDVSFKHA
501: WLIYFWRRAK THGIEEDIAD ERLQFWIARN AVAPNSHDAI DVERGLTELR KLGIEQQLWE GTRADIDEAA SAAMEDE
101: PPPPARFGSG ARAGHGSNGV SLLGRTARSP SPALGRNIVE PPPTVRSASA GRTAAIASRP TATVVPPIKT STTIRTPSPI PPVAVESPVE RPRQKRFDTA
201: PLNSRESAPR RESSTLQDEL DMLQEENESV LDKLRRAEEK CEEAEARAKE LEKQVAALGD GVSLEARLLS RKEAALKQRE AALKAARESN DGRNGEVSTI
301: KHELESAKEE VAAVMDQLKE AESESKALRS MTQRMILTQE EMEEVVLKRC WLARYWGLAV QYGVYPEIAV SKHEHWSSLA PLPLEVVLSA GQKAIKEEPR
401: KQEFIQAGED DAQRRNRLVR EMSDVMGEGN IESMLSVEMG LRELSSLKVE DAVVVALGQH RRPSIVRQFT SDYKSPGEPK FLEAFDLSNE EAEDVSFKHA
501: WLIYFWRRAK THGIEEDIAD ERLQFWIARN AVAPNSHDAI DVERGLTELR KLGIEQQLWE GTRADIDEAA SAAMEDE
001: MDRRRAGSPV YGRQWSESSN STEATSPAMS PAHRKQLGGI GGFSTVKRTQ NVAAKAAAQR LAKVMALQNK DNGDEDDEDE DEDLSLRFAS ASLKPARHAP
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS
101: SSISSTGSNS SNGNNNLPAV SFAPRTRSPS PALGRNFAEQ VPSSVRSASA GRPSMSARST TPTPIPNLMP PSRVSVKTPV SIPPLDPPTR SRDKRFFADV
201: PSVNSKEKGD QREASALRDE LDMLQEENEN VLEKLRRAEE KRVEAEARAK ELEKQVASLG EGVSLEAKLL SRKEAALRQR EAALNVAKQK KSGKDEEIVS
301: LRSELENLKD EATTAAERLQ EAESEAKSLR TMTQRMILTQ DEMEEVVLKR CWLARYWGLA VQHGICADIA PSRQEHWSKL APLPFELVTS AAQKAKELSW
401: DKGGNDRSKA ARDLSDLTGE GNIESMLSVE MGLRELASLK VEDAVVLIFA QQRKLSLVRH TVSDSKGHGE SRFIDAYELG EAEQEDVAFK QAWLMYFWGR
501: AKLHGVEDDI AEERVQLWIS RSSGKSQTTS HDALDVERGL IELRKLGIEQ QLWEASRREI DQLPSPTSSN HDLDADS
Arabidopsis Description
SCD2Coiled-coil domain-containing protein SCD2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.