Factsheet for VIT_18s0001g04140.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g00390.t01
VIT_14s0066g01280.t01
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09320.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944
AT5G09320.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT5G09320.1	VIT_06s0004g00390.t01	AT5G64780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P18180_001	Banana	cytosol	57.02	63.46
CDY51691	Canola	cytosol	53.78	62.41
KRH64753	Soybean	cytosol	61.12	60.86
KRH53154	Soybean	cytosol	60.69	60.17
CDY24616	Canola	cytosol	58.53	58.15
Bra022450.1-P	Field mustard	cytosol	57.88	57.63
VIT_18s0089g01070.t01	Wine grape	cytosol	22.25	57.22
Solyc01g096990.2.1	Tomato	cytosol	59.83	57.11
AT5G09320.1	Thale cress	cytosol	53.35	56.52
OQU92877	Sorghum	cytosol	57.24	56.38
TraesCS4A01G088300.1	Wheat	cytosol	57.45	56.36
Os03t0262900-02	Rice	cytosol, plasma membrane	58.1	56.04
TraesCS4B01G215900.1	Wheat	cytosol	57.45	55.77
HORVU4Hr1G061320.1	Barley	cytosol	58.1	55.69
TraesCS4D01G216400.1	Wheat	cytosol	56.37	54.95
PGSC0003DMT400070782	Potato	cytosol	58.96	54.27
Bra009378.1-P	Field mustard	cytosol	57.67	52.15
AT3G19770.1	Thale cress	cytosol	58.32	51.92
Zm00001d047863_P004	Maize	cytosol	56.16	51.28
CDY21574	Canola	cytosol	52.48	38.09
CDX69912	Canola	cytosol	57.24	37.17

Protein Annotations

Gene3D:1.10.246.120	Gene3D:1.20.1050.80	EntrezGene:100252293	wikigene:100252293	MapMan:22.8.3.1	ProteinID:CCB45530
ProteinID:CCB45530.1	UniProt:F6H0N3	EMBL:FN595227	InterPro:IPR003123	InterPro:IPR037191	EntrezGene:LOC100252293
wikigene:LOC100252293	PFAM:PF02204	PFscan:PS51205	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	SMART:SM00167
SUPFAM:SSF109993	UniParc:UPI00015C75BD	ArrayExpress:VIT_18s0001g04140	EnsemblPlantsGene:VIT_18s0001g04140	EnsemblPlants:VIT_18s0001g04140.t01	InterPro:VPS9
InterPro:VPS9_dom_sf	unigene:Vvi.17239	RefSeq:XP_002285827	RefSeq:XP_002285827.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:3725171..3732449

Molecular Weight (calculated)

51594.1 Da

IEP (calculated)

4.502

GRAVY (calculated)

-0.328

Length

463 amino acids

Sequence
(BLAST)

001: MENADPFASS TAPLTWHDFL ERMRQPSAAD FVKAIKSFIV SFSNNAPDPE RDSAAVQEFL ANMEMAFRAH PLWAGCSEEE LESAGEGLEK YVMTKLYTRV
101: FASVPDDSKL DEQLFEKIGL VQQFIRPEQL DIKTTFQNET SWLLAQKELQ KINMYKAPRD KLVCILNCCK VINNLLLNAS IASNEDPPGA DEFLPVLIYV
201: TLKANPPQLH SNLLYILRYR RQSRMVAEAA YFFTNMLSAE SFISNINAES LSMDEREFEM NMESARALLS GLSSDLDGVL KEPQQKSLYS TKEKDPSIGS
301: DLSLLSSEAT SGAKLEPHAK DQLITKVPSI SDLENKGAAM LLKEDQASLA FREYPYLYAN VGDLTVNDVE DLLNHYKQLV FKHVCLSKGL GVPAPPLPLS
401: ISQTQAQKHA ETMKDSADTR AAEVKDNTLN DIGSTNDVSN QVSLFEVETS ESKLPQEEAV VPQ

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.