Factsheet for GSMUA_Achr8P18180_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P09630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09320.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT5G09320.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT5G09320.1	GSMUA_Achr10P...	AT5G64780.1	21798944
AT5G09320.1	GSMUA_Achr10P...	AT5G64780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G088300.1	Wheat	cytosol	68.27	60.17
OQU92877	Sorghum	cytosol	67.55	59.79
Os03t0262900-02	Rice	cytosol, plasma membrane	68.75	59.58
TraesCS4B01G215900.1	Wheat	cytosol	67.07	58.49
HORVU4Hr1G061320.1	Barley	cytosol	67.31	57.97
CDY51691	Canola	cytosol	55.53	57.89
TraesCS4D01G216400.1	Wheat	cytosol	65.62	57.47
VIT_18s0001g04140.t01	Wine grape	cytosol	63.46	57.02
Zm00001d047863_P004	Maize	cytosol	66.11	54.24
Bra022450.1-P	Field mustard	cytosol	60.58	54.19
KRH53154	Soybean	cytosol	60.82	54.18
KRH64753	Soybean	cytosol	60.34	53.98
CDY24616	Canola	cytosol	59.38	53.0
Solyc01g096990.2.1	Tomato	cytosol	61.06	52.37
AT5G09320.1	Thale cress	cytosol	54.09	51.49
PGSC0003DMT400070782	Potato	cytosol	62.02	51.29
Bra009378.1-P	Field mustard	cytosol	59.38	48.24
AT3G19770.1	Thale cress	cytosol	59.38	47.5
GSMUA_Achr6P18560_001	Banana	cytosol	40.87	45.58
CDY21574	Canola	cytosol	54.81	35.74
CDX69912	Canola	cytosol	59.38	34.64

Protein Annotations

EnsemblPlants:GSMUA_Achr8P18180_001	EnsemblPlants:GSMUA_Achr8T18180_001	EnsemblPlantsGene:GSMUA_Achr8G18180_001	Gene3D:1.10.246.120	Gene3D:1.20.1050.80	InterPro:IPR003123
InterPro:IPR037191	InterPro:VPS9	InterPro:VPS9_dom_sf	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	PFAM:PF02204
PFscan:PS51205	SEG:seg	SMART:SM00167	SUPFAM:SSF109993	UniParc:UPI0002967BE0	UniProt:M0TRH1
MapMan:22.8.3.1	:	:	:	:	:

Description

vacuolar sorting protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G18180_001]

Coordinates

chr8:+:21444732..21452483

Molecular Weight (calculated)

46358.5 Da

IEP (calculated)

4.365

GRAVY (calculated)

-0.372

Length

416 amino acids

Sequence
(BLAST)

001: MEGGGGDAFG SSTAPLTWHD FLERMRHPSA ADFVKSIKSF IVSFSNKAPD PENDSAAVQD FLTNMEGAFR AHTLWAGSSE EELESAGEGL EKYVMTKLFS
101: RVFASVPEDA NSDGELYEKM ALLQQFVRPE NLDIQPAFQN ETSWLLAQKE LQKINMYKAP RDKLVCILNC CKVINNLLLN ASIASNENPP GADEFLPVLI
201: YVTIKANPPQ LHSNLLYIQR YRRQSRLVSE AAYFFTNILS AESFIWNIDA QALSMDEIEF QKKMESARAH LMGLSTGTEH QQTETHLDAM EERLKSNREL
301: DNTASEYPFL FANAGDLTVD DVGSLLNCYK QLVLRYVALS KGMGIGNESL SLPNTETPSE LSSVKESEYV AEMEMKVEDH EEVSRKGGSS VEDLILQMDD
401: AESKKVADDS TAEVSP

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.