Factsheet for HORVU4Hr1G061320.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G021220.8
HORVU6Hr1G069310.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09320.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT5G09320.1	HORVU3Hr1G021220.8	AT5G64780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G216400.1	Wheat	cytosol	89.86	91.37
TraesCS4A01G088300.1	Wheat	cytosol	88.82	90.89
TraesCS4B01G215900.1	Wheat	cytosol	89.03	90.15
Os03t0262900-02	Rice	cytosol, plasma membrane	77.23	77.71
OQU92877	Sorghum	cytosol	72.46	74.47
Zm00001d047863_P004	Maize	cytosol	73.08	69.63
GSMUA_Achr8P18180_001	Banana	cytosol	57.97	67.31
VIT_18s0001g04140.t01	Wine grape	cytosol	55.69	58.1
CDY51691	Canola	cytosol	47.2	57.14
CDY24616	Canola	cytosol	53.21	55.15
Bra022450.1-P	Field mustard	cytosol	52.38	54.41
AT5G09320.1	Thale cress	cytosol	48.03	53.09
KRH64753	Soybean	cytosol	50.93	52.9
KRH53154	Soybean	cytosol	50.93	52.68
Solyc01g096990.2.1	Tomato	cytosol	52.59	52.37
PGSC0003DMT400070782	Potato	cytosol	53.83	51.69
Bra009378.1-P	Field mustard	cytosol	50.93	48.05
AT3G19770.1	Thale cress	cytosol	51.35	47.69
HORVU5Hr1G120090.3	Barley	cytosol	29.81	37.31
CDY21574	Canola	cytosol	47.2	35.74
CDX69912	Canola	cytosol	51.14	34.64

Protein Annotations

EnsemblPlants:HORVU4Hr1G061320.1	EnsemblPlantsGene:HORVU4Hr1G061320	Gene3D:1.10.246.120	Gene3D:1.20.1050.80	InterPro:IPR003123	InterPro:IPR037191
InterPro:VPS9	InterPro:VPS9_dom_sf	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	PFAM:PF02204	PFscan:PS51205
SEG:seg	SMART:SM00167	SUPFAM:SSF109993	UniParc:UPI0002952B7E	UniProt:M0WB23	MapMan:22.8.3.1

Description

No Description!

Coordinates

chrchr4H:+:515459343..515465028

Molecular Weight (calculated)

53993.2 Da

IEP (calculated)

4.456

GRAVY (calculated)

-0.564

Length

483 amino acids

Sequence
(BLAST)

001: MEGGADAFGS STAPLAWHDF LERMRQPSAA EFVKSIKGFI MNFSNRAPDP ERDSAAVQEF LENMEGAFRA HTPWAGSSEE ELESAGEGLE KYVMTKLYNR
101: VFASVPEDVK SDEELFEKIS LLQQFIRPEN LDIKPEYQNE TSWLLAQKEL QKINMYKAPR DKLACILNCC KVINNLLMNA SHMSHDNPPG ADEFLPVLIY
201: VTIKANPPQL HSNLLYIQRY RCQSRLVSEA QYFFTNILSA ESFVWNIEAE SLSMDERDFQ KKMDLARERL LGLSVGSDNQ ENQTNLDVGE HGSQTLKASG
301: NSDANLPLKD HVQGPVQDMK RASDVSSKSV ERVQSISDLE KKGATELVKD DDLSKIFQEY PFLFARAGDL TVADVDTLLN SYKQLVLKYV ALSKGMGVTP
401: ETPLVQNMQT ASDLQISEEP ENVKSVVNSC DSTEASSKTQ EDIRNEIPDS EEVGNAGTQQ AAVDPSRDQK TLKNESSDQP EHA

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.