Factsheet for Solyc01g096990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09320.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT5G09320.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G09320.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G09320.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G09320.1	Solyc06g072990.1.1	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070782	Potato	cytosol	85.36	82.31
GSMUA_Achr8P18180_001	Banana	cytosol	52.37	61.06
VIT_18s0001g04140.t01	Wine grape	cytosol	57.11	59.83
KRH53154	Soybean	cytosol	56.91	59.1
KRH64753	Soybean	cytosol	56.49	58.92
CDY51691	Canola	cytosol	47.42	57.64
OQU92877	Sorghum	cytosol	53.2	54.89
Bra022450.1-P	Field mustard	cytosol	52.58	54.84
CDY24616	Canola	cytosol	51.96	54.08
TraesCS4A01G088300.1	Wheat	cytosol	51.55	52.97
TraesCS4B01G215900.1	Wheat	cytosol	51.96	52.83
HORVU4Hr1G061320.1	Barley	cytosol	52.37	52.59
Os03t0262900-02	Rice	cytosol, plasma membrane	51.75	52.29
AT5G09320.1	Thale cress	cytosol	46.8	51.95
TraesCS4D01G216400.1	Wheat	cytosol	50.52	51.58
Zm00001d047863_P004	Maize	cytosol	52.37	50.1
AT3G19770.1	Thale cress	cytosol	52.78	49.23
Bra009378.1-P	Field mustard	cytosol	51.13	48.44
CDY21574	Canola	cytosol	46.8	35.58
CDX69912	Canola	cytosol	51.34	34.92

Protein Annotations

EnsemblPlants:Solyc01g096990.2.1	EnsemblPlantsGene:Solyc01g096990.2	Gene3D:1.10.246.120	Gene3D:1.20.1050.80	InterPro:IPR003123	InterPro:IPR037191
InterPro:VPS9	InterPro:VPS9_dom_sf	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	PFAM:PF02204	PFscan:PS51205
SEG:seg	SMART:SM00167	SUPFAM:SSF109993	UniParc:UPI0002767E31	UniProt:K4B087	MapMan:22.8.3.1

Description

No Description!

Coordinates

chr1:+:87972261..87977950

Molecular Weight (calculated)

54081.2 Da

IEP (calculated)

4.328

GRAVY (calculated)

-0.503

Length

485 amino acids

Sequence
(BLAST)

001: MENSDVLGSS TAPLTWHDFL QRMRDPSAAE FVKSIKSFIV SFLNNVPDAE RDSAAVQEFL GNMETAFRAH SLWAGCSEEE LESAGEGLEK YVMTKLFTRT
101: FASLPEDVKV DEQLHEKIAL IQQFVRPENL DIKPTFQNES SWLLAQKELQ KINMYRAPRD KLVCILNCCK VINNILTSVS AKDNPPGADD FLPVLIYVTI
201: KANPPQLHSN LLYIQRFRRQ TRLVSEAAYF FTNILSAESF ISNIDARALS MDETEFETNM ESARALLSGL SADNNVLDQS DQNAGPVPGA DTSDAKQSFR
301: SNRPPHPATQ PNLSVASTET NIKNEDQYSK SQSSMEKIPS LSDLEHRGAS MLIKEDSISQ VFQSFPYLYS QAGDLTVGDI EELLTNYKRL VIKYICLAKG
401: SGIDNPSPPL PNNEEQTLPP EFEFNTESEA ASAGEPIDET QKDEPIDETL KDRVEDSSVL PKSLESDELK LKENEQLSSK GEEGS

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.