Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra017974.1-P | |
| Bra024327.1-P | |
| Bra025315.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G09320.1 | Bra025315.1-P | AT3G27960.1 | 21798944 |
| AT5G09320.1 | Bra017974.1-P | AT3G49580.1 | 21798944 |
| AT5G09320.1 | Bra024327.1-P | AT5G64780.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G09320.1 | Thale cress | cytosol | 66.41 | 77.8 |
| Bra022450.1-P | Field mustard | cytosol | 63.87 | 70.32 |
| CDX69912 | Canola | cytosol | 88.87 | 63.81 |
| GSMUA_Achr8P18180_001 | Banana | cytosol | 48.24 | 59.38 |
| VIT_18s0001g04140.t01 | Wine grape | cytosol | 52.15 | 57.67 |
| KRH64753 | Soybean | cytosol | 51.17 | 56.34 |
| KRH53154 | Soybean | cytosol | 51.37 | 56.32 |
| OQU92877 | Sorghum | cytosol | 50.39 | 54.89 |
| Os03t0262900-02 | Rice | cytosol, plasma membrane | 50.78 | 54.17 |
| TraesCS4A01G088300.1 | Wheat | cytosol | 48.24 | 52.33 |
| TraesCS4B01G215900.1 | Wheat | cytosol | 47.85 | 51.36 |
| Solyc01g096990.2.1 | Tomato | cytosol | 48.44 | 51.13 |
| HORVU4Hr1G061320.1 | Barley | cytosol | 48.05 | 50.93 |
| TraesCS4D01G216400.1 | Wheat | cytosol | 47.07 | 50.74 |
| Zm00001d047863_P004 | Maize | cytosol | 48.63 | 49.11 |
| PGSC0003DMT400070782 | Potato | cytosol | 48.05 | 48.91 |
| Bra009377.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 9.18 | 18.43 |
Protein Annotations
| EnsemblPlants:Bra009378.1 | EnsemblPlants:Bra009378.1-P | EnsemblPlantsGene:Bra009378 | Gene3D:1.10.246.120 | Gene3D:1.20.1050.80 | InterPro:IPR003123 |
| InterPro:IPR037191 | InterPro:VPS9 | InterPro:VPS9_dom_sf | ncoils:Coil | PANTHER:PTHR23101 | PANTHER:PTHR23101:SF25 |
| PFAM:PF02204 | PFscan:PS51205 | SEG:seg | SMART:SM00167 | SUPFAM:SSF109993 | UniParc:UPI0002547667 |
| UniProt:M4CYT1 | MapMan:22.8.3.1 | : | : | : | : |
Description
AT5G09320 (E=2e-179) VPS9B | VPS9B
Coordinates
chrA10:-:16395507..16397562
Molecular Weight (calculated)
57018.2 Da
IEP (calculated)
4.338
GRAVY (calculated)
-0.579
Length
512 amino acids
Sequence
(BLAST)
(BLAST)
001: MENIDVFPGL HDFLERMRKP SAGDFVKSIK SFIVSFSNHA PDPEKDSEAV QEFFTKMEAA FRAHPLWSGS SEEELDSAAD GLEKYVMTKL FTRVFASNTE
101: DVISDEKLFQ KMSLVQQFIS PESLDIQPTF QNETSWLLAQ KELQKMNMYK APRDKLMCIL SCCKVINNLL LNASIASKEN APGADEFLPV LIYVTIKANP
201: PQFHSNLLYI QRYRRQSKLV GEASYFFTNL LSAESFISNI DAKSLSMDEA DFENKMESAR ARLSGLGIQS YQTDHGAAPT AHNPKRETTL LQSQSSDSLS
301: GTNETLNQRS ELPIKKAESI SDLENKGAAT LLNGSSEASK ILKEYPYVFA SAGDLRVGDV EGLLNDYKQL VFKYVCLSKG LGEATTSLAS SSSPLQPSTE
401: TETEDQTTVS SDVQTKTETD RSVDDLMRAL QGEGDNVHKL SDVKQEDYSE DVVQERGEEL DPKVVEETDT EDIDLKKLSA EIEDDNSSSK RAEDEDADSK
501: HLVAEDQNDQ SQ
101: DVISDEKLFQ KMSLVQQFIS PESLDIQPTF QNETSWLLAQ KELQKMNMYK APRDKLMCIL SCCKVINNLL LNASIASKEN APGADEFLPV LIYVTIKANP
201: PQFHSNLLYI QRYRRQSKLV GEASYFFTNL LSAESFISNI DAKSLSMDEA DFENKMESAR ARLSGLGIQS YQTDHGAAPT AHNPKRETTL LQSQSSDSLS
301: GTNETLNQRS ELPIKKAESI SDLENKGAAT LLNGSSEASK ILKEYPYVFA SAGDLRVGDV EGLLNDYKQL VFKYVCLSKG LGEATTSLAS SSSPLQPSTE
401: TETEDQTTVS SDVQTKTETD RSVDDLMRAL QGEGDNVHKL SDVKQEDYSE DVVQERGEEL DPKVVEETDT EDIDLKKLSA EIEDDNSSSK RAEDEDADSK
501: HLVAEDQNDQ SQ
001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE
Arabidopsis Description
VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.