Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000891.1-P | |
| Bra008559.1-P | |
| Bra018296.1-P | |
| Bra033467.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G64780.1 | Bra018296.1-P | AT3G51920.1 | 17360592 |
| AT5G64780.1 | Bra033467.1-P | AT3G51920.1 | 17360592 |
| AT5G64780.1 | Bra000891.1-P | AT4G02150.1 | 21798944 |
| AT5G64780.1 | Bra008559.1-P | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08851 | Canola | nucleus | 97.13 | 97.13 |
| AT5G64780.1 | Thale cress | nucleus | 70.69 | 70.29 |
| Bra037888.1-P | Field mustard | nucleus | 44.25 | 40.53 |
| Bra000694.1-P | Field mustard | nucleus | 43.1 | 39.47 |
| VIT_06s0004g00390.t01 | Wine grape | cytosol | 26.44 | 34.07 |
| GSMUA_Achr10P... | Banana | nucleus | 37.36 | 30.52 |
| TraesCS3B01G135700.1 | Wheat | nucleus | 30.46 | 26.11 |
| TraesCS3D01G118500.1 | Wheat | nucleus | 30.46 | 26.11 |
| GSMUA_Achr10P... | Banana | nucleus | 37.36 | 26.1 |
| TraesCS3A01G116700.1 | Wheat | nucleus | 29.31 | 25.12 |
| Os01t0182500-00 | Rice | nucleus | 27.59 | 23.76 |
| HORVU3Hr1G021220.8 | Barley | nucleus | 27.59 | 23.53 |
| KXG31677 | Sorghum | nucleus | 14.94 | 12.68 |
Protein Annotations
| EnsemblPlants:Bra024327.1 | EnsemblPlants:Bra024327.1-P | EnsemblPlantsGene:Bra024327 | InterPro:UCP009193 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF3 |
| PIRSF:PIRSF009193 | UniParc:UPI000253F47D | UniProt:M4E6C3 | MapMan:35.2 | : | : |
Description
AT5G64780 (E=2e-071) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP009193 (InterPro:IPR016549); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09830.1); Has 56 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA06:-:14995862..14997163
Molecular Weight (calculated)
19937.1 Da
IEP (calculated)
6.588
GRAVY (calculated)
-0.932
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKRKSDAS RLDEVDRTMY GAFRGAANSL SQLYTHAMNH QRVSFLAGER RWLEKLHQWI VRQEEEGTRV STDDITTYLQ NELEYEPEET STPAPMQEFH
101: QIHTQFAPPN VHTSSAAHAP PSHIPQHYDF NQEKVFLTQP NGLSSPVRRT LQDFSLREAE PGNHHPNSTG QGLF
101: QIHTQFAPPN VHTSSAAHAP PSHIPQHYDF NQEKVFLTQP NGLSSPVRRT LQDFSLREAE PGNHHPNSTG QGLF
001: MGKKRKSEAT RLDEVDRTMY GAFRGAANSL SQLYTHAMNH QRVSFLAGER RGMEKLYQWI VRQEEQGTRV STADITTYLQ NALEYEPEET SIPLPMQEFY
101: QHQFAPPNVN TSVAHVPSSH IAQQQHYDCN QEKLLIPPNG LSSPVRRTLQ DFNLCEAESG NNNYNPNSTG EHLSY
101: QHQFAPPNVN TSVAHVPSSH IAQQQHYDCN QEKLLIPPNG LSSPVRRTLQ DFNLCEAESG NNNYNPNSTG EHLSY
Arabidopsis Description
Holocarboxylase synthetase [Source:UniProtKB/TrEMBL;Acc:Q9FGF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.