Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14510 | Canola | nucleus | 73.14 | 73.56 |
| CDY08851 | Canola | nucleus | 71.43 | 71.84 |
| Bra024327.1-P | Field mustard | nucleus | 70.29 | 70.69 |
| AT4G09830.1 | Thale cress | nucleus | 43.43 | 39.79 |
| VIT_06s0004g00390.t01 | Wine grape | cytosol | 26.29 | 34.07 |
| GSMUA_Achr10P... | Banana | nucleus | 38.29 | 31.46 |
| GSMUA_Achr10P... | Banana | nucleus | 40.57 | 28.51 |
| TraesCS3A01G116700.1 | Wheat | nucleus | 29.14 | 25.12 |
| TraesCS3B01G135700.1 | Wheat | nucleus | 29.14 | 25.12 |
| TraesCS3D01G118500.1 | Wheat | nucleus | 29.14 | 25.12 |
| Os01t0182500-00 | Rice | nucleus | 28.0 | 24.26 |
| HORVU3Hr1G021220.8 | Barley | nucleus | 28.0 | 24.02 |
| KXG31677 | Sorghum | nucleus | 13.71 | 11.71 |
Protein Annotations
| MapMan:35.2 | EntrezGene:836599 | UniProt:A0A178UKH2 | ProteinID:AED97950.1 | EMBL:AK226926 | ArrayExpress:AT5G64780 |
| EnsemblPlantsGene:AT5G64780 | RefSeq:AT5G64780 | TAIR:AT5G64780 | RefSeq:AT5G64780-TAIR-G | EnsemblPlants:AT5G64780.1 | TAIR:AT5G64780.1 |
| EMBL:AY074385 | EMBL:AY091256 | ProteinID:BAB10311.1 | GO:GO:0008150 | RefSeq:NP_201283.1 | ProteinID:OAO94249.1 |
| PIRSF:PIRSF009193 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF3 | UniProt:Q9FGF5 | InterPro:UCP009193 |
| UniParc:UPI00000A4CA6 | : | : | : | : | : |
Description
Holocarboxylase synthetase [Source:UniProtKB/TrEMBL;Acc:Q9FGF5]
Coordinates
chr5:-:25900412..25902127
Molecular Weight (calculated)
19992.2 Da
IEP (calculated)
6.393
GRAVY (calculated)
-0.843
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKRKSEAT RLDEVDRTMY GAFRGAANSL SQLYTHAMNH QRVSFLAGER RGMEKLYQWI VRQEEQGTRV STADITTYLQ NALEYEPEET SIPLPMQEFY
101: QHQFAPPNVN TSVAHVPSSH IAQQQHYDCN QEKLLIPPNG LSSPVRRTLQ DFNLCEAESG NNNYNPNSTG EHLSY
101: QHQFAPPNVN TSVAHVPSSH IAQQQHYDCN QEKLLIPPNG LSSPVRRTLQ DFNLCEAESG NNNYNPNSTG EHLSY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.