Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0005g01100.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G64780.1 | VIT_07s0005g01100.t01 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0031g01940.t01 | Wine grape | nucleus | 45.19 | 28.77 |
| Bra024327.1-P | Field mustard | nucleus | 34.07 | 26.44 |
| CDY08851 | Canola | nucleus | 34.07 | 26.44 |
| CDY14510 | Canola | nucleus | 34.07 | 26.44 |
| AT5G64780.1 | Thale cress | nucleus | 34.07 | 26.29 |
| GSMUA_Achr10P... | Banana | nucleus | 40.74 | 25.82 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 40.0 | 25.0 |
| TraesCS3A01G116700.1 | Wheat | nucleus | 31.85 | 21.18 |
| TraesCS3B01G135700.1 | Wheat | nucleus | 31.85 | 21.18 |
| TraesCS3D01G118500.1 | Wheat | nucleus | 31.85 | 21.18 |
| HORVU3Hr1G021220.8 | Barley | nucleus | 31.85 | 21.08 |
| GSMUA_Achr10P... | Banana | nucleus | 38.52 | 20.88 |
| Os01t0182500-00 | Rice | nucleus | 31.11 | 20.79 |
| KXG31677 | Sorghum | nucleus | 16.3 | 10.73 |
| VIT_11s0016g03800.t01 | Wine grape | plastid | 17.04 | 10.65 |
Protein Annotations
| ArrayExpress:VIT_06s0004g00390 | EMBL:FN594951 | EnsemblPlants:VIT_06s0004g00390.t01 | EnsemblPlantsGene:VIT_06s0004g00390 | EntrezGene:100256958 | EntrezGene:LOC100256958 |
| PANTHER:PTHR33675 | PANTHER:PTHR33675:SF4 | ProteinID:CBI16543 | ProteinID:CBI16543.3 | RefSeq:XP_002285738 | RefSeq:XP_002285738.1 |
| RefSeq:XP_010651389.1 | TIGR:TC52871 | unigene:Vvi.2383 | UniParc:UPI00015C7FEE | UniProt:D7SLL5 | wikigene:100256958 |
| wikigene:LOC100256958 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:510833..518216
Molecular Weight (calculated)
15135.5 Da
IEP (calculated)
4.797
GRAVY (calculated)
-0.619
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQKRKVEVT TDIDDESDRV LYSVFRSAAG GLSHLYSQAL NHHKVAFEAG QRHALEKLNE WMTVKHQEGM LVTTADISAY LQNELNSVSL PSNPLHGRQN
101: EADLSFSTSL TQSQDRDENA FCSLSSEMEI EESPH
101: EADLSFSTSL TQSQDRDENA FCSLSSEMEI EESPH
001: MGKKRKSEAT RLDEVDRTMY GAFRGAANSL SQLYTHAMNH QRVSFLAGER RGMEKLYQWI VRQEEQGTRV STADITTYLQ NALEYEPEET SIPLPMQEFY
101: QHQFAPPNVN TSVAHVPSSH IAQQQHYDCN QEKLLIPPNG LSSPVRRTLQ DFNLCEAESG NNNYNPNSTG EHLSY
101: QHQFAPPNVN TSVAHVPSSH IAQQQHYDCN QEKLLIPPNG LSSPVRRTLQ DFNLCEAESG NNNYNPNSTG EHLSY
Arabidopsis Description
Holocarboxylase synthetase [Source:UniProtKB/TrEMBL;Acc:Q9FGF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.