Factsheet for VIT_07s0031g01940.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43349	Soybean	nucleus	70.28	69.3
VIT_18s0072g00100.t01	Wine grape	nucleus	69.34	68.06
KRH59490	Soybean	nucleus	68.4	67.44
GSMUA_Achr3P26480_001	Banana	nucleus	62.74	63.33
GSMUA_Achr8P04040_001	Banana	nucleus	61.79	62.09
GSMUA_Achr1P14490_001	Banana	nucleus	61.32	61.32
GSMUA_Achr2P08370_001	Banana	nucleus	60.85	61.14
Os01t0589500-01	Rice	nucleus	54.25	57.5
EES03193	Sorghum	nucleus	54.25	56.65
TraesCS3D01G214300.1	Wheat	nucleus	52.36	55.5
TraesCS3B01G242000.1	Wheat	nucleus	52.36	55.5
TraesCS5B01G187800.1	Wheat	nucleus	50.47	54.87
HORVU5Hr1G056860.2	Barley	nucleus	50.47	54.87
TraesCS5D01G195400.1	Wheat	nucleus	50.0	54.36
TraesCS5A01G195600.1	Wheat	nucleus	50.0	54.36
Zm00001d044332_P001	Maize	nucleus	49.53	52.24
Os09t0360400-01	Rice	nucleus	48.11	52.04
EER96625	Sorghum	nucleus	47.64	51.79
Zm00001d005645_P001	Maize	nucleus	47.17	51.28
Zm00001d020205_P001	Maize	nucleus	47.17	51.28
GSMUA_Achr6P35970_001	Banana	nucleus	50.94	50.94
TraesCS3A01G211600.1	Wheat	nucleus	52.36	50.92
GSMUA_AchrUn_...	Banana	nucleus	46.23	47.34
VIT_06s0004g00390.t01	Wine grape	cytosol	28.77	45.19
HORVU3Hr1G051220.5	Barley	cytosol, nucleus	51.42	44.67
Os08t0397900-01	Rice	plasma membrane	41.04	41.43
VIT_11s0016g03800.t01	Wine grape	plastid	25.0	24.54

Protein Annotations

EntrezGene:100245741	wikigene:100245741	MapMan:35.2	EMBL:AM433890	ProteinID:CAN64859	ProteinID:CAN64859.1
ProteinID:CBI21544	ProteinID:CBI21544.3	UniProt:D7SW95	InterPro:DUF4588	EMBL:FN595233	EntrezGene:LOC100245741
wikigene:LOC100245741	PFAM:PF15251	PIRSF:PIRSF009193	PANTHER:PTHR33675	PANTHER:PTHR33675:SF3	InterPro:UCP009193
UniParc:UPI00015C967C	ArrayExpress:VIT_07s0031g01940	EnsemblPlantsGene:VIT_07s0031g01940	EnsemblPlants:VIT_07s0031g01940.t01	RefSeq:XP_002278435	RefSeq:XP_002278435.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:18050334..18062613

Molecular Weight (calculated)

23601.2 Da

IEP (calculated)

6.967

GRAVY (calculated)

-0.850

Length

212 amino acids

Sequence
(BLAST)

001: MAKKRKSDAT RLDEVDRTMY TSFCSAANSL SQLYTQAMNQ QRLSFQAGER HALEKLYQWV LRQQEEGSRV TTVDIVAYLQ NELEYGVEDA PVSPRLPLQH
101: QHTQTTMHMT NSGAPVSSNS FGHPSAVGTG LRFGNIDQQP KNNVFSNALS SPVRRSLQNY HLAQGSYYSN NVMPSGNGPR NSETQTRDLN PPSSNDSSMD
201: MHADSPGHES SY

Best Arabidopsis Sequence Match ( AT4G09830.1 )
(BLAST)

001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E

Arabidopsis Description

Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.