Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P26480_001 | Banana | nucleus | 78.67 | 79.05 |
| GSMUA_Achr1P14490_001 | Banana | nucleus | 77.73 | 77.36 |
| GSMUA_Achr2P08370_001 | Banana | nucleus | 75.36 | 75.36 |
| VIT_07s0031g01940.t01 | Wine grape | nucleus | 62.09 | 61.79 |
| KRH43349 | Soybean | nucleus | 59.72 | 58.6 |
| KRH59490 | Soybean | nucleus | 59.24 | 58.14 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 58.29 | 58.02 |
| PGSC0003DMT400036539 | Potato | cytosol | 20.85 | 54.32 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 55.45 | 54.17 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.61 | 53.62 |
| CDY05080 | Canola | nucleus | 47.39 | 52.63 |
| PGSC0003DMT400064508 | Potato | nucleus | 52.61 | 52.61 |
| CDX99511 | Canola | nucleus | 47.39 | 52.36 |
| CDX86890 | Canola | nucleus | 45.97 | 51.87 |
| CDX90738 | Canola | nucleus | 46.45 | 51.58 |
| Bra000694.1-P | Field mustard | nucleus | 46.45 | 51.58 |
| Bra037888.1-P | Field mustard | nucleus | 46.45 | 51.58 |
| KRH08644 | Soybean | nucleus | 49.76 | 51.47 |
| AT4G09830.1 | Thale cress | nucleus | 46.45 | 51.31 |
| Solyc12g056630.1.1 | Tomato | nucleus | 45.97 | 50.52 |
| KRH70259 | Soybean | nucleus | 48.82 | 50.24 |
| Solyc04g071980.2.1 | Tomato | nucleus | 48.82 | 48.82 |
| GSMUA_Achr10P... | Banana | nucleus | 43.13 | 42.72 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 27.01 | 42.54 |
| KRH35097 | Soybean | nucleus | 44.08 | 41.33 |
| PGSC0003DMT400048373 | Potato | nucleus | 54.03 | 39.04 |
| GSMUA_Achr10P... | Banana | nucleus | 43.6 | 36.95 |
| KRG91702 | Soybean | cytosol, nucleus | 27.96 | 35.33 |
| VIT_11s0016g03800.t01 | Wine grape | plastid | 19.91 | 19.44 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P04040_001 | EnsemblPlants:GSMUA_Achr8T04040_001 | EnsemblPlantsGene:GSMUA_Achr8G04040_001 | InterPro:UCP009193 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF3 |
| PIRSF:PIRSF009193 | UniParc:UPI000295A1A3 | UniProt:M0TMF7 | MapMan:35.2 | : | : |
Description
holocarboxylase synthetase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G04040_001]
Coordinates
chr8:+:2759687..2764336
Molecular Weight (calculated)
23330.9 Da
IEP (calculated)
7.468
GRAVY (calculated)
-0.721
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKRKTEAM RLDEVDRTLY STFCSAANSL SQLYTQAMNQ QKISFQAGER HAMEKLYQWI VRKHEEGSRV SVADIVTHIQ NVMDYAGEDA LVSPRSSFPH
101: QHHTPMHATN SSAQPPSALF GQPTVGLASR SGHSDQTKNS VFSNALSSPV RRSLQPYHVA QGDGFYVNGV VPAGNTGSRN PDANQHRETN SLSFSDSSMD
201: IHTDSPPHES Y
101: QHHTPMHATN SSAQPPSALF GQPTVGLASR SGHSDQTKNS VFSNALSSPV RRSLQPYHVA QGDGFYVNGV VPAGNTGSRN PDANQHRETN SLSFSDSSMD
201: IHTDSPPHES Y
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.