Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09830.1 | KRG91702 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | KRH08644 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | KRH35097 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | KRH70259 | AT4G09830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH70259 | Soybean | nucleus | 87.25 | 86.83 |
| CDX86890 | Canola | nucleus | 59.8 | 65.24 |
| CDX99511 | Canola | nucleus | 60.78 | 64.92 |
| AT4G09830.1 | Thale cress | nucleus | 60.78 | 64.92 |
| Bra000694.1-P | Field mustard | nucleus | 59.8 | 64.21 |
| Bra037888.1-P | Field mustard | nucleus | 59.8 | 64.21 |
| CDX90738 | Canola | nucleus | 59.8 | 64.21 |
| CDY05080 | Canola | nucleus | 59.8 | 64.21 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 67.65 | 63.89 |
| KRH35097 | Soybean | nucleus | 64.71 | 58.67 |
| PGSC0003DMT400064508 | Potato | nucleus | 58.82 | 56.87 |
| KRG91702 | Soybean | cytosol, nucleus | 45.1 | 55.09 |
| Solyc04g071980.2.1 | Tomato | nucleus | 56.86 | 54.98 |
| Solyc12g056630.1.1 | Tomato | nucleus | 50.0 | 53.12 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 34.8 | 52.99 |
| KRH43349 | Soybean | nucleus | 53.92 | 51.16 |
| GSMUA_Achr3P26480_001 | Banana | nucleus | 51.47 | 50.0 |
| GSMUA_Achr1P14490_001 | Banana | nucleus | 51.96 | 50.0 |
| KRH59490 | Soybean | nucleus | 52.45 | 49.77 |
| GSMUA_Achr8P04040_001 | Banana | nucleus | 51.47 | 49.76 |
| GSMUA_Achr2P08370_001 | Banana | nucleus | 50.98 | 49.29 |
| Os01t0589500-01 | Rice | nucleus | 47.55 | 48.5 |
| EER96625 | Sorghum | nucleus | 46.08 | 48.21 |
| HORVU5Hr1G056860.2 | Barley | nucleus | 45.59 | 47.69 |
| Zm00001d020205_P001 | Maize | nucleus | 45.59 | 47.69 |
| Zm00001d005645_P001 | Maize | nucleus | 45.59 | 47.69 |
| TraesCS5B01G187800.1 | Wheat | nucleus | 45.59 | 47.69 |
| TraesCS5A01G195600.1 | Wheat | nucleus | 45.1 | 47.18 |
| EES03193 | Sorghum | nucleus | 46.57 | 46.8 |
| TraesCS5D01G195400.1 | Wheat | nucleus | 44.61 | 46.67 |
| TraesCS3B01G242000.1 | Wheat | nucleus | 45.59 | 46.5 |
| TraesCS3D01G214300.1 | Wheat | nucleus | 45.59 | 46.5 |
| Os09t0360400-01 | Rice | nucleus | 44.61 | 46.43 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 47.55 | 45.75 |
| Zm00001d044332_P001 | Maize | nucleus | 44.12 | 44.78 |
| TraesCS3A01G211600.1 | Wheat | nucleus | 45.1 | 42.2 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.65 | 42.03 |
| PGSC0003DMT400048373 | Potato | nucleus | 58.33 | 40.75 |
| Os08t0397900-01 | Rice | plasma membrane | 40.2 | 39.05 |
| HORVU3Hr1G051220.5 | Barley | cytosol, nucleus | 43.63 | 36.48 |
Protein Annotations
| EMBL:ACUP02010186 | EnsemblPlants:KRH08644 | EnsemblPlantsGene:GLYMA_16G163600 | EntrezGene:100793841 | InterPro:UCP009193 | PANTHER:PTHR33675 |
| PANTHER:PTHR33675:SF3 | PIRSF:PIRSF009193 | ProteinID:KRH08644 | ProteinID:KRH08644.1 | UniParc:UPI000233C029 | UniProt:I1MP33 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr16:+:32270301..32273136
Molecular Weight (calculated)
22432.9 Da
IEP (calculated)
6.945
GRAVY (calculated)
-0.699
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKKRKSIAT SLDEVDRTLY ASFCTAANSL SQLYTHSMNH QKLSFNAGER HALEKLYQWI FRQQEGGSRV GTVDVLNYIQ NELDYCGEEP SMSPRAPLQH
101: QSQAALHVPS FPVTSASSGQ TIAAQGLRSD HCENQSKNSV FSNALSSPVR RSLQHYQIGE GGCYTNGLSM GNGNRNTEPG FLNQQSRDSN AVSSNDSAMD
201: MHAD
101: QSQAALHVPS FPVTSASSGQ TIAAQGLRSD HCENQSKNSV FSNALSSPVR RSLQHYQIGE GGCYTNGLSM GNGNRNTEPG FLNQQSRDSN AVSSNDSAMD
201: MHAD
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.