Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09830.1 | KRG91702 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | KRH08644 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | KRH35097 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | KRH70259 | AT4G09830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35097 | Soybean | nucleus | 64.67 | 48.0 |
| KRH70259 | Soybean | nucleus | 56.29 | 45.85 |
| KRH08644 | Soybean | nucleus | 55.09 | 45.1 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 34.73 | 43.28 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 53.29 | 41.2 |
| CDY05080 | Canola | nucleus | 41.92 | 36.84 |
| CDX99511 | Canola | nucleus | 41.92 | 36.65 |
| PGSC0003DMT400064508 | Potato | nucleus | 46.11 | 36.49 |
| Bra000694.1-P | Field mustard | nucleus | 41.32 | 36.32 |
| Bra037888.1-P | Field mustard | nucleus | 41.32 | 36.32 |
| CDX90738 | Canola | nucleus | 41.32 | 36.32 |
| CDX86890 | Canola | nucleus | 40.12 | 35.83 |
| Solyc04g071980.2.1 | Tomato | nucleus | 44.91 | 35.55 |
| AT4G09830.1 | Thale cress | nucleus | 39.52 | 34.55 |
| Solyc12g056630.1.1 | Tomato | nucleus | 35.93 | 31.25 |
| KRH43349 | Soybean | nucleus | 40.12 | 31.16 |
| GSMUA_Achr1P14490_001 | Banana | nucleus | 37.72 | 29.72 |
| GSMUA_Achr3P26480_001 | Banana | nucleus | 37.13 | 29.52 |
| KRH59490 | Soybean | nucleus | 37.72 | 29.3 |
| Os01t0589500-01 | Rice | nucleus | 34.73 | 29.0 |
| EES03193 | Sorghum | nucleus | 34.13 | 28.08 |
| GSMUA_Achr8P04040_001 | Banana | nucleus | 35.33 | 27.96 |
| TraesCS3D01G214300.1 | Wheat | nucleus | 32.93 | 27.5 |
| TraesCS3B01G242000.1 | Wheat | nucleus | 32.93 | 27.5 |
| GSMUA_Achr2P08370_001 | Banana | nucleus | 34.73 | 27.49 |
| Zm00001d044332_P001 | Maize | nucleus | 32.34 | 26.87 |
| PGSC0003DMT400048373 | Potato | nucleus | 44.31 | 25.34 |
| TraesCS3A01G211600.1 | Wheat | nucleus | 32.93 | 25.23 |
| Os09t0360400-01 | Rice | nucleus | 29.34 | 25.0 |
| HORVU5Hr1G056860.2 | Barley | nucleus | 28.74 | 24.62 |
| TraesCS5B01G187800.1 | Wheat | nucleus | 28.74 | 24.62 |
| EER96625 | Sorghum | nucleus | 28.74 | 24.62 |
| Zm00001d005645_P001 | Maize | nucleus | 28.74 | 24.62 |
| Zm00001d020205_P001 | Maize | nucleus | 28.74 | 24.62 |
| TraesCS5A01G195600.1 | Wheat | nucleus | 28.14 | 24.1 |
| TraesCS5D01G195400.1 | Wheat | nucleus | 28.14 | 24.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.74 | 23.19 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 29.34 | 23.11 |
| Os08t0397900-01 | Rice | plasma membrane | 28.14 | 22.38 |
| HORVU3Hr1G051220.5 | Barley | cytosol, nucleus | 32.34 | 22.13 |
Protein Annotations
| EMBL:ACUP02012699 | EnsemblPlants:KRG91702 | EnsemblPlantsGene:GLYMA_20G169800 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF1 | ProteinID:KRG91702 |
| ProteinID:KRG91702.1 | SEG:seg | UniParc:UPI0002964FF5 | UniProt:K7N3Z0 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr20:-:40738650..40740236
Molecular Weight (calculated)
18269.1 Da
IEP (calculated)
6.409
GRAVY (calculated)
-0.730
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: HGEEEKIHSH KPPRAGSNHL LFLLQCRQFQ EGGSRVATVD ILSYIQNELD YCGEEPCMSP RAPQHQQQSQ PVMQVTGSGF PVTSGFSGQT IVGQGLRSEH
101: CDKQSKNYVF SNASSNPVRQ IGEGGYHPSG LSMGNVNRSI EPNLLHQQSR DSAAFSSNDS AMDMHAD
101: CDKQSKNYVF SNASSNPVRQ IGEGGYHPSG LSMGNVNRSI EPNLLHQQSR DSAAFSSNDS AMDMHAD
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.