Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400048373 | |
| PGSC0003DMT400064508 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09830.1 | PGSC0003DMT400048373 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | PGSC0003DMT400064508 | AT4G09830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g071980.2.1 | Tomato | nucleus | 94.31 | 94.31 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 68.25 | 66.67 |
| KRH70259 | Soybean | nucleus | 59.24 | 60.98 |
| CDX86890 | Canola | nucleus | 54.03 | 60.96 |
| CDX99511 | Canola | nucleus | 54.5 | 60.21 |
| CDY05080 | Canola | nucleus | 53.55 | 59.47 |
| Bra037888.1-P | Field mustard | nucleus | 53.08 | 58.95 |
| PGSC0003DMT400048373 | Potato | nucleus | 81.52 | 58.9 |
| KRH08644 | Soybean | nucleus | 56.87 | 58.82 |
| AT4G09830.1 | Thale cress | nucleus | 53.08 | 58.64 |
| Bra000694.1-P | Field mustard | nucleus | 52.61 | 58.42 |
| CDX90738 | Canola | nucleus | 52.61 | 58.42 |
| PGSC0003DMT400036539 | Potato | cytosol | 21.8 | 56.79 |
| Os01t0589500-01 | Rice | nucleus | 53.55 | 56.5 |
| GSMUA_Achr3P26480_001 | Banana | nucleus | 55.92 | 56.19 |
| GSMUA_Achr2P08370_001 | Banana | nucleus | 55.45 | 55.45 |
| EES03193 | Sorghum | nucleus | 53.08 | 55.17 |
| TraesCS3D01G214300.1 | Wheat | nucleus | 51.18 | 54.0 |
| TraesCS3B01G242000.1 | Wheat | nucleus | 51.18 | 54.0 |
| GSMUA_Achr1P14490_001 | Banana | nucleus | 53.55 | 53.3 |
| Zm00001d044332_P001 | Maize | nucleus | 50.24 | 52.74 |
| GSMUA_Achr8P04040_001 | Banana | nucleus | 52.61 | 52.61 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 32.7 | 51.49 |
| TraesCS3A01G211600.1 | Wheat | nucleus | 51.18 | 49.54 |
| TraesCS5B01G187800.1 | Wheat | nucleus | 44.55 | 48.21 |
| KRH35097 | Soybean | nucleus | 51.18 | 48.0 |
| HORVU5Hr1G056860.2 | Barley | nucleus | 44.08 | 47.69 |
| EER96625 | Sorghum | nucleus | 43.6 | 47.18 |
| TraesCS5A01G195600.1 | Wheat | nucleus | 43.6 | 47.18 |
| TraesCS5D01G195400.1 | Wheat | nucleus | 43.6 | 47.18 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 47.39 | 47.17 |
| Os09t0360400-01 | Rice | nucleus | 43.6 | 46.94 |
| Zm00001d005645_P001 | Maize | nucleus | 43.13 | 46.67 |
| Zm00001d020205_P001 | Maize | nucleus | 42.65 | 46.15 |
| KRG91702 | Soybean | cytosol, nucleus | 36.49 | 46.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.18 | 43.0 |
| HORVU3Hr1G051220.5 | Barley | cytosol, nucleus | 49.29 | 42.62 |
| Os08t0397900-01 | Rice | plasma membrane | 38.86 | 39.05 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400064508 | EnsemblPlantsGene:PGSC0003DMG400025065 | EntrezGene:102584007 | InterPro:DUF4588 | InterPro:UCP009193 | PANTHER:PTHR33675 |
| PANTHER:PTHR33675:SF3 | PFAM:PF15251 | PGSC:PGSC0003DMG400025065 | PIRSF:PIRSF009193 | RefSeq:XP_006359041.1 | SEG:seg |
| UniParc:UPI000294BE21 | UniProt:M1CCH2 | MapMan:35.2 | : | : | : |
Description
Holocarboxylase synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400025065]
Coordinates
chr4:-:61179401..61186016
Molecular Weight (calculated)
23432.7 Da
IEP (calculated)
6.864
GRAVY (calculated)
-0.928
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKRKSLAS SIDEVDRTMY STFCSAANSL SQLYSQALNQ QKLSFQAGER HGLEKMYQWI LRQQEGGSRV TTADMMNYLQ SELDYSGEDH SMSPRPPQNQ
101: HSQPMHFANS GFPVSSGSIG VAAPGHGVRS DHDPQSKNYV FSNALSSPVR QSLQNYQVAQ GGYFSNNVQP SNGARNNETN LHHQNRESNS YNSADASMDM
201: HSDSPGHDFT Y
101: HSQPMHFANS GFPVSSGSIG VAAPGHGVRS DHDPQSKNYV FSNALSSPVR QSLQNYQVAQ GGYFSNNVQP SNGARNNETN LHHQNRESNS YNSADASMDM
201: HSDSPGHDFT Y
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.