Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005645_P001 | |
| Zm00001d020205_P001 | |
| Zm00001d044332_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09830.1 | Zm00001d005645_P001 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | Zm00001d020205_P001 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | Zm00001d044332_P001 | AT4G09830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER96625 | Sorghum | nucleus | 96.92 | 96.92 |
| Zm00001d020205_P001 | Maize | nucleus | 87.18 | 87.18 |
| Os09t0360400-01 | Rice | nucleus | 82.05 | 81.63 |
| TraesCS5A01G195600.1 | Wheat | nucleus | 78.97 | 78.97 |
| TraesCS5B01G187800.1 | Wheat | nucleus | 78.97 | 78.97 |
| TraesCS5D01G195400.1 | Wheat | nucleus | 78.97 | 78.97 |
| HORVU5Hr1G056860.2 | Barley | nucleus | 78.46 | 78.46 |
| VIT_07s0031g01940.t01 | Wine grape | nucleus | 51.28 | 47.17 |
| CDX99511 | Canola | nucleus | 46.15 | 47.12 |
| CDX86890 | Canola | nucleus | 45.13 | 47.06 |
| Bra037888.1-P | Field mustard | nucleus | 45.64 | 46.84 |
| AT4G09830.1 | Thale cress | nucleus | 45.64 | 46.6 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 51.28 | 46.3 |
| Bra000694.1-P | Field mustard | nucleus | 44.62 | 45.79 |
| CDX90738 | Canola | nucleus | 44.62 | 45.79 |
| PGSC0003DMT400036539 | Potato | cytosol | 18.97 | 45.68 |
| KRH08644 | Soybean | nucleus | 47.69 | 45.59 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.21 | 45.41 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 49.23 | 45.28 |
| Zm00001d044332_P001 | Maize | nucleus | 46.67 | 45.27 |
| CDY05080 | Canola | nucleus | 44.1 | 45.26 |
| Solyc12g056630.1.1 | Tomato | nucleus | 44.1 | 44.79 |
| KRH70259 | Soybean | nucleus | 46.67 | 44.39 |
| KRH59490 | Soybean | nucleus | 48.21 | 43.72 |
| KRH43349 | Soybean | nucleus | 48.21 | 43.72 |
| PGSC0003DMT400064508 | Potato | nucleus | 46.67 | 43.13 |
| Solyc04g071980.2.1 | Tomato | nucleus | 45.64 | 42.18 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 25.13 | 36.57 |
| KRH35097 | Soybean | nucleus | 37.95 | 32.89 |
| PGSC0003DMT400048373 | Potato | nucleus | 49.23 | 32.88 |
| KRG91702 | Soybean | cytosol, nucleus | 24.62 | 28.74 |
| VIT_11s0016g03800.t01 | Wine grape | plastid | 17.44 | 15.74 |
Protein Annotations
| EMBL:BT063163 | EnsemblPlants:Zm00001d005645_P001 | EnsemblPlants:Zm00001d005645_T001 | EnsemblPlantsGene:Zm00001d005645 | EntrezGene:100286155 | InterPro:UCP009193 |
| PANTHER:PTHR33675 | PANTHER:PTHR33675:SF5 | PIRSF:PIRSF009193 | ProteinID:ONM21601.1 | SEG:seg | UniParc:UPI0001948DDF |
| UniProt:C0P4E4 | MapMan:35.2 | : | : | : | : |
Description
Uncharacterised conserved protein UCP009193
Coordinates
chr2:+:181818631..181822298
Molecular Weight (calculated)
21157.3 Da
IEP (calculated)
7.039
GRAVY (calculated)
-0.738
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKKRKAEA ARLEETDRAL YGAFRGAANS LSQLYTLGMG AQKASFHAGE RHAMEKLYEW ILRQHENGLR LTVADVASHI QHEIQYGGDN ASASPRSQYP
101: SQSTAPTMHI PNTSNQQPSP SLFASGNPGL TQSKNSMVFS SALSSPIRRS LQPYHLEQDG DAGYFANGAS RDVNPTASND SSMDMHSDSP AHDSY
101: SQSTAPTMHI PNTSNQQPSP SLFASGNPGL TQSKNSMVFS SALSSPIRRS LQPYHLEQDG DAGYFANGAS RDVNPTASND SSMDMHSDSP AHDSY
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.