Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G195600.1 | Wheat | nucleus | 99.49 | 99.49 |
| HORVU5Hr1G056860.2 | Barley | nucleus | 98.46 | 98.46 |
| TraesCS5B01G187800.1 | Wheat | nucleus | 97.95 | 97.95 |
| Os09t0360400-01 | Rice | nucleus | 85.13 | 84.69 |
| Zm00001d020205_P001 | Maize | nucleus | 82.56 | 82.56 |
| EER96625 | Sorghum | nucleus | 80.51 | 80.51 |
| Zm00001d005645_P001 | Maize | nucleus | 78.97 | 78.97 |
| TraesCS3D01G214300.1 | Wheat | nucleus | 52.31 | 51.0 |
| VIT_07s0031g01940.t01 | Wine grape | nucleus | 54.36 | 50.0 |
| PGSC0003DMT400036539 | Potato | cytosol | 20.0 | 48.15 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 52.82 | 47.69 |
| CDX99511 | Canola | nucleus | 46.67 | 47.64 |
| CDX86890 | Canola | nucleus | 45.64 | 47.59 |
| Bra037888.1-P | Field mustard | nucleus | 46.15 | 47.37 |
| CDY05080 | Canola | nucleus | 46.15 | 47.37 |
| Bra000694.1-P | Field mustard | nucleus | 45.64 | 46.84 |
| CDX90738 | Canola | nucleus | 45.64 | 46.84 |
| AT4G09830.1 | Thale cress | nucleus | 45.64 | 46.6 |
| KRH59490 | Soybean | nucleus | 50.26 | 45.58 |
| KRH43349 | Soybean | nucleus | 49.74 | 45.12 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 48.72 | 44.81 |
| Solyc12g056630.1.1 | Tomato | nucleus | 44.1 | 44.79 |
| KRH08644 | Soybean | nucleus | 46.67 | 44.61 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.67 | 43.96 |
| PGSC0003DMT400064508 | Potato | nucleus | 47.18 | 43.6 |
| Solyc04g071980.2.1 | Tomato | nucleus | 45.64 | 42.18 |
| KRH70259 | Soybean | nucleus | 44.1 | 41.95 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 24.62 | 35.82 |
| KRH35097 | Soybean | nucleus | 38.97 | 33.78 |
| PGSC0003DMT400048373 | Potato | nucleus | 49.74 | 33.22 |
| TraesCS3D01G118500.1 | Wheat | nucleus | 32.82 | 31.53 |
| KRG91702 | Soybean | cytosol, nucleus | 24.1 | 28.14 |
| VIT_11s0016g03800.t01 | Wine grape | plastid | 20.0 | 18.06 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G195400.1 | EnsemblPlantsGene:TraesCS5D01G195400 | InterPro:UCP009193 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF5 | PIRSF:PIRSF009193 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:298939653..298942710
Molecular Weight (calculated)
21071.4 Da
IEP (calculated)
7.373
GRAVY (calculated)
-0.725
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGKKRKAEA ARLDETDRAM YGAFRGAANS LSQLYTLAMG GQKLSFQAGE RHAMEKLYEW ILRQHENGLR LTVGDIASHV QHEIQYGGDN PLASPRSQYA
101: SQSTHGTVHM PNTSNQQPSA SLFALGNPGL TQPKNSAVFS NALSSPVRRG LQPYHLDQGG DAGYFANGLA REPNPTASND SSMDMHSDSP AHDSS
101: SQSTHGTVHM PNTSNQQPSA SLFALGNPGL TQPKNSAVFS NALSSPVRRG LQPYHLDQGG DAGYFANGLA REPNPTASND SSMDMHSDSP AHDSS
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.