Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86890 | Canola | nucleus | 88.48 | 90.37 |
| Bra000694.1-P | Field mustard | nucleus | 89.01 | 89.47 |
| Bra037888.1-P | Field mustard | nucleus | 89.01 | 89.47 |
| CDX90738 | Canola | nucleus | 89.01 | 89.47 |
| CDX99511 | Canola | nucleus | 89.01 | 89.01 |
| CDY05080 | Canola | nucleus | 88.48 | 88.95 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 57.59 | 82.09 |
| KRH08644 | Soybean | nucleus | 64.92 | 60.78 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 66.49 | 58.8 |
| KRH70259 | Soybean | nucleus | 61.78 | 57.56 |
| PGSC0003DMT400064508 | Potato | nucleus | 58.64 | 53.08 |
| GSMUA_Achr3P26480_001 | Banana | nucleus | 57.07 | 51.9 |
| Solyc04g071980.2.1 | Tomato | nucleus | 56.54 | 51.18 |
| GSMUA_Achr2P08370_001 | Banana | nucleus | 56.02 | 50.71 |
| KRH35097 | Soybean | nucleus | 57.59 | 48.89 |
| GSMUA_Achr1P14490_001 | Banana | nucleus | 53.4 | 48.11 |
| Solyc12g056630.1.1 | Tomato | nucleus | 48.17 | 47.92 |
| GSMUA_Achr8P04040_001 | Banana | nucleus | 51.31 | 46.45 |
| Os09t0360400-01 | Rice | nucleus | 47.64 | 46.43 |
| TraesCS5B01G187800.1 | Wheat | nucleus | 47.12 | 46.15 |
| HORVU5Hr1G056860.2 | Barley | nucleus | 47.12 | 46.15 |
| TraesCS5A01G195600.1 | Wheat | nucleus | 46.6 | 45.64 |
| TraesCS5D01G195400.1 | Wheat | nucleus | 46.6 | 45.64 |
| Zm00001d005645_P001 | Maize | nucleus | 46.6 | 45.64 |
| EER96625 | Sorghum | nucleus | 46.6 | 45.64 |
| Os01t0589500-01 | Rice | nucleus | 47.64 | 45.5 |
| EES03193 | Sorghum | nucleus | 47.64 | 44.83 |
| Zm00001d020205_P001 | Maize | nucleus | 45.55 | 44.62 |
| TraesCS3B01G242000.1 | Wheat | nucleus | 45.55 | 43.5 |
| TraesCS3D01G214300.1 | Wheat | nucleus | 45.55 | 43.5 |
| AT5G64780.1 | Thale cress | nucleus | 39.79 | 43.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.07 | 42.51 |
| Zm00001d044332_P001 | Maize | nucleus | 43.98 | 41.79 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 46.07 | 41.51 |
| TraesCS3A01G211600.1 | Wheat | nucleus | 45.55 | 39.91 |
| KRG91702 | Soybean | cytosol, nucleus | 34.55 | 39.52 |
| Os08t0397900-01 | Rice | plasma membrane | 42.41 | 38.57 |
| PGSC0003DMT400048373 | Potato | nucleus | 57.07 | 37.33 |
| HORVU3Hr1G051220.5 | Barley | cytosol, nucleus | 44.5 | 34.84 |
Protein Annotations
| MapMan:35.2 | EntrezGene:826572 | UniProt:A0A178UV65 | ProteinID:AEE82803.1 | ArrayExpress:AT4G09830 | EnsemblPlantsGene:AT4G09830 |
| RefSeq:AT4G09830 | TAIR:AT4G09830 | RefSeq:AT4G09830-TAIR-G | EnsemblPlants:AT4G09830.1 | TAIR:AT4G09830.1 | EMBL:AY074338 |
| EMBL:AY091370 | Unigene:At.46849 | ProteinID:CAB39650.1 | ProteinID:CAB78106.1 | GO:GO:0008150 | RefSeq:NP_192721.1 |
| ProteinID:OAO96611.1 | PIRSF:PIRSF009193 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR33675 | PANTHER:PTHR33675:SF3 | UniProt:Q9SZ98 | InterPro:UCP009193 | UniParc:UPI00000A884A | SEG:seg |
Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
Coordinates
chr4:+:6188755..6190853
Molecular Weight (calculated)
21072.6 Da
IEP (calculated)
8.069
GRAVY (calculated)
-0.727
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.