Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P26480_001 | Banana | nucleus | 78.3 | 79.05 |
| GSMUA_Achr8P04040_001 | Banana | nucleus | 77.36 | 77.73 |
| GSMUA_Achr2P08370_001 | Banana | nucleus | 76.42 | 76.78 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 61.79 | 61.79 |
| VIT_07s0031g01940.t01 | Wine grape | nucleus | 61.32 | 61.32 |
| KRH43349 | Soybean | nucleus | 57.08 | 56.28 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 56.6 | 55.56 |
| KRH59490 | Soybean | nucleus | 56.13 | 55.35 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.77 | 55.07 |
| CDY05080 | Canola | nucleus | 48.11 | 53.68 |
| PGSC0003DMT400064508 | Potato | nucleus | 53.3 | 53.55 |
| CDX99511 | Canola | nucleus | 48.11 | 53.4 |
| AT4G09830.1 | Thale cress | nucleus | 48.11 | 53.4 |
| Bra000694.1-P | Field mustard | nucleus | 47.64 | 53.16 |
| CDX90738 | Canola | nucleus | 47.64 | 53.16 |
| CDX86890 | Canola | nucleus | 46.7 | 52.94 |
| Bra037888.1-P | Field mustard | nucleus | 47.17 | 52.63 |
| Solyc12g056630.1.1 | Tomato | nucleus | 47.17 | 52.08 |
| KRH08644 | Soybean | nucleus | 50.0 | 51.96 |
| KRH70259 | Soybean | nucleus | 49.53 | 51.22 |
| Solyc04g071980.2.1 | Tomato | nucleus | 50.94 | 51.18 |
| PGSC0003DMT400036539 | Potato | cytosol | 18.87 | 49.38 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 28.3 | 44.78 |
| GSMUA_Achr10P... | Banana | nucleus | 43.4 | 43.19 |
| KRH35097 | Soybean | nucleus | 44.81 | 42.22 |
| PGSC0003DMT400048373 | Potato | nucleus | 53.77 | 39.04 |
| KRG91702 | Soybean | cytosol, nucleus | 29.72 | 37.72 |
| GSMUA_Achr10P... | Banana | nucleus | 43.87 | 37.35 |
| VIT_11s0016g03800.t01 | Wine grape | plastid | 19.81 | 19.44 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P14490_001 | EnsemblPlants:GSMUA_Achr1T14490_001 | EnsemblPlantsGene:GSMUA_Achr1G14490_001 | InterPro:UCP009193 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF3 |
| PIRSF:PIRSF009193 | SEG:seg | UniParc:UPI000294CEAA | UniProt:M0RZV7 | MapMan:35.2 | : |
Description
holocarboxylase synthetase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G14490_001]
Coordinates
chr1:-:10995343..11000619
Molecular Weight (calculated)
23211.8 Da
IEP (calculated)
7.168
GRAVY (calculated)
-0.655
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKRKSEAM GLDEADRTLY STFCAAANSL SQVYTQAMNQ QKISFQAGER HALEKLYQWI VRNHEEGSRV TIADIVTHIQ NEMDYAGEGS LVSPRSPFQH
101: QHHQTTIHLT NSGIQPASGL FGQPTVGLAS RSGHSDQAKN SVFSNALSSQ VCRSLQPYHL AQGSGLYANA VIPTGTAGAR NHDPNQNRDT NSLSSNYSSM
201: DIHTDSPPHE AY
101: QHHQTTIHLT NSGIQPASGL FGQPTVGLAS RSGHSDQAKN SVFSNALSSQ VCRSLQPYHL AQGSGLYANA VIPTGTAGAR NHDPNQNRDT NSLSSNYSSM
201: DIHTDSPPHE AY
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.