Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09830.1 | CDX86890 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | CDX90738 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | CDX99511 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | CDY05080 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | CDY60294 | AT4G09830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000694.1-P | Field mustard | nucleus | 98.42 | 98.42 |
| CDX90738 | Canola | nucleus | 98.42 | 98.42 |
| CDX86890 | Canola | nucleus | 92.11 | 93.58 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 64.74 | 91.79 |
| CDX99511 | Canola | nucleus | 92.11 | 91.62 |
| AT4G09830.1 | Thale cress | nucleus | 88.95 | 88.48 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 68.42 | 60.19 |
| KRH08644 | Soybean | nucleus | 64.21 | 59.8 |
| KRH70259 | Soybean | nucleus | 60.0 | 55.61 |
| PGSC0003DMT400064508 | Potato | nucleus | 59.47 | 53.55 |
| Solyc04g071980.2.1 | Tomato | nucleus | 57.37 | 51.66 |
| GSMUA_Achr3P26480_001 | Banana | nucleus | 56.32 | 50.95 |
| GSMUA_Achr2P08370_001 | Banana | nucleus | 55.79 | 50.24 |
| KRH35097 | Soybean | nucleus | 58.95 | 49.78 |
| Solyc12g056630.1.1 | Tomato | nucleus | 49.47 | 48.96 |
| GSMUA_Achr1P14490_001 | Banana | nucleus | 53.68 | 48.11 |
| GSMUA_Achr8P04040_001 | Banana | nucleus | 52.63 | 47.39 |
| TraesCS5B01G187800.1 | Wheat | nucleus | 47.89 | 46.67 |
| HORVU5Hr1G056860.2 | Barley | nucleus | 47.89 | 46.67 |
| TraesCS5A01G195600.1 | Wheat | nucleus | 47.37 | 46.15 |
| TraesCS5D01G195400.1 | Wheat | nucleus | 47.37 | 46.15 |
| Os01t0589500-01 | Rice | nucleus | 48.42 | 46.0 |
| Os09t0360400-01 | Rice | nucleus | 47.37 | 45.92 |
| EES03193 | Sorghum | nucleus | 48.42 | 45.32 |
| TraesCS3B01G242000.1 | Wheat | nucleus | 46.84 | 44.5 |
| TraesCS3D01G214300.1 | Wheat | nucleus | 46.84 | 44.5 |
| CDY08851 | Canola | nucleus | 40.53 | 44.25 |
| Zm00001d005645_P001 | Maize | nucleus | 45.26 | 44.1 |
| EER96625 | Sorghum | nucleus | 45.26 | 44.1 |
| CDY14510 | Canola | nucleus | 40.0 | 43.68 |
| Zm00001d020205_P001 | Maize | nucleus | 44.74 | 43.59 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 47.89 | 42.92 |
| Zm00001d044332_P001 | Maize | nucleus | 45.26 | 42.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.32 | 42.51 |
| KRG91702 | Soybean | cytosol, nucleus | 36.84 | 41.92 |
| TraesCS3A01G211600.1 | Wheat | nucleus | 46.84 | 40.83 |
| Os08t0397900-01 | Rice | plasma membrane | 44.21 | 40.0 |
| PGSC0003DMT400048373 | Potato | nucleus | 58.42 | 38.01 |
| HORVU3Hr1G051220.5 | Barley | cytosol, nucleus | 45.79 | 35.66 |
Protein Annotations
| EnsemblPlants:CDY05080 | EnsemblPlantsGene:GSBRNA2T00119841001 | InterPro:UCP009193 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF3 | PIRSF:PIRSF009193 |
| ProteinID:CDY05080 | ProteinID:CDY05080.1 | SEG:seg | UniParc:UPI0004EBA527 | MapMan:35.2 | : |
Description
BnaC03g28780D
Coordinates
chrLK031959:+:485602..487080
Molecular Weight (calculated)
20916.3 Da
IEP (calculated)
6.920
GRAVY (calculated)
-0.728
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKRKATET SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPVDIINYIQ NELECCTEEP PISPRAPPPQ
101: PTMHVTNSGL IASSGTSCPT AVPAVRSEQC ENQAKNSVFS NALSSPVRRS LQNYQVPQGG YISGGTRSSE LNRGSDSPSS FDSSMDMHAE
101: PTMHVTNSGL IASSGTSCPT AVPAVRSEQC ENQAKNSVFS NALSSPVRRS LQNYQVPQGG YISGGTRSSE LNRGSDSPSS FDSSMDMHAE
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.