Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
18260611
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0589500-01 | |
| Os08t0397900-01 | |
| Os09t0360400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09830.1 | Os01t0589500-01 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | Os08t0397900-01 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | Os09t0360400-01 | AT4G09830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0360400-01 | Rice | nucleus | 58.1 | 62.24 |
| Os01t0589500-01 | Rice | nucleus | 43.33 | 45.5 |
| CDY05080 | Canola | nucleus | 40.0 | 44.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.86 | 43.48 |
| CDX99511 | Canola | nucleus | 39.52 | 43.46 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 43.81 | 43.4 |
| CDX86890 | Canola | nucleus | 38.57 | 43.32 |
| Bra000694.1-P | Field mustard | nucleus | 39.05 | 43.16 |
| Bra037888.1-P | Field mustard | nucleus | 39.05 | 43.16 |
| CDX90738 | Canola | nucleus | 39.05 | 43.16 |
| AT4G09830.1 | Thale cress | nucleus | 38.57 | 42.41 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 42.38 | 41.2 |
| VIT_07s0031g01940.t01 | Wine grape | nucleus | 41.43 | 41.04 |
| KRH08644 | Soybean | nucleus | 39.05 | 40.2 |
| Solyc04g071980.2.1 | Tomato | nucleus | 39.52 | 39.34 |
| KRH43349 | Soybean | nucleus | 40.0 | 39.07 |
| Solyc12g056630.1.1 | Tomato | nucleus | 35.71 | 39.06 |
| PGSC0003DMT400064508 | Potato | nucleus | 39.05 | 38.86 |
| KRH59490 | Soybean | nucleus | 39.52 | 38.6 |
| KRH70259 | Soybean | nucleus | 36.67 | 37.56 |
| PGSC0003DMT400036539 | Potato | cytosol | 14.29 | 37.04 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 23.33 | 36.57 |
| KRH35097 | Soybean | nucleus | 36.19 | 33.78 |
| PGSC0003DMT400048373 | Potato | nucleus | 39.52 | 28.42 |
| KRG91702 | Soybean | cytosol, nucleus | 22.38 | 28.14 |
| Os01t0182500-00 | Rice | nucleus | 25.24 | 26.24 |
| VIT_11s0016g03800.t01 | Wine grape | plastid | 15.24 | 14.81 |
Protein Annotations
| EMBL:AK109817 | EnsemblPlants:Os08t0397900-01 | EnsemblPlantsGene:Os08g0397900 | EntrezGene:4345496 | InterPro:UCP009193 | PANTHER:PTHR33675 |
| PANTHER:PTHR33675:SF5 | PIRSF:PIRSF009193 | ProteinID:BAD73670.1 | ProteinID:BAF23655.1 | ProteinID:BAT05317.1 | SEG:seg |
| UniParc:UPI000043DF78 | UniProt:Q5QLN8 | MapMan:35.2 | : | : | : |
Description
Uncharacterised conserved protein UCP009193 domain containing protein. (Os08t0397900-01);Similar to Holocarboxylase synthetase. (Os08t0397900-02);Similar to Holocarboxylase synthetase. (Os08t0397900-03)
Coordinates
chr8:+:18956803..18961096
Molecular Weight (calculated)
22772.4 Da
IEP (calculated)
6.672
GRAVY (calculated)
-0.639
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRKRKAEA ARAAEEEADR ALYGAFRGAA NSLSQLYALA GAHQRLSFHA GERHALEKLY QWMVRQHEIG LRLTVSDIAS HIQHEIEYGG DNALTSPRSQ
101: HAFQNLQAPM HIPNTSTQQP PSCSITPSNP SKDSMIFSKA LSSPVRQNLQ LYHVQQCGDT GCFADGIFCP GNGDSDPAAS NDSSVDMHSD SPGFPRPTEA
201: LRDSEGGRPS
101: HAFQNLQAPM HIPNTSTQQP PSCSITPSNP SKDSMIFSKA LSSPVRQNLQ LYHVQQCGDT GCFADGIFCP GNGDSDPAAS NDSSVDMHSD SPGFPRPTEA
201: LRDSEGGRPS
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.