Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400048373 | |
| PGSC0003DMT400064508 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09830.1 | PGSC0003DMT400048373 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | PGSC0003DMT400064508 | AT4G09830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g056630.1.1 | Tomato | nucleus | 63.01 | 95.83 |
| PGSC0003DMT400064508 | Potato | nucleus | 58.9 | 81.52 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 50.34 | 68.06 |
| PGSC0003DMT400036539 | Potato | cytosol | 18.15 | 65.43 |
| CDX86890 | Canola | nucleus | 38.01 | 59.36 |
| CDX99511 | Canola | nucleus | 38.36 | 58.64 |
| Bra037888.1-P | Field mustard | nucleus | 38.01 | 58.42 |
| CDY05080 | Canola | nucleus | 38.01 | 58.42 |
| KRH08644 | Soybean | nucleus | 40.75 | 58.33 |
| KRH70259 | Soybean | nucleus | 40.75 | 58.05 |
| Bra000694.1-P | Field mustard | nucleus | 37.67 | 57.89 |
| CDX90738 | Canola | nucleus | 37.67 | 57.89 |
| AT4G09830.1 | Thale cress | nucleus | 37.33 | 57.07 |
| GSMUA_Achr3P26480_001 | Banana | nucleus | 40.75 | 56.67 |
| Os01t0589500-01 | Rice | nucleus | 38.01 | 55.5 |
| GSMUA_Achr8P04040_001 | Banana | nucleus | 39.04 | 54.03 |
| GSMUA_Achr2P08370_001 | Banana | nucleus | 39.04 | 54.03 |
| GSMUA_Achr1P14490_001 | Banana | nucleus | 39.04 | 53.77 |
| EES03193 | Sorghum | nucleus | 36.64 | 52.71 |
| TraesCS3D01G214300.1 | Wheat | nucleus | 35.96 | 52.5 |
| TraesCS3B01G242000.1 | Wheat | nucleus | 35.96 | 52.5 |
| TraesCS5B01G187800.1 | Wheat | nucleus | 33.9 | 50.77 |
| HORVU5Hr1G056860.2 | Barley | nucleus | 33.56 | 50.26 |
| EER96625 | Sorghum | nucleus | 33.56 | 50.26 |
| Os09t0360400-01 | Rice | nucleus | 33.56 | 50.0 |
| Zm00001d044332_P001 | Maize | nucleus | 34.25 | 49.75 |
| TraesCS5A01G195600.1 | Wheat | nucleus | 33.22 | 49.74 |
| TraesCS5D01G195400.1 | Wheat | nucleus | 33.22 | 49.74 |
| Zm00001d005645_P001 | Maize | nucleus | 32.88 | 49.23 |
| Zm00001d020205_P001 | Maize | nucleus | 32.53 | 48.72 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 22.26 | 48.51 |
| TraesCS3A01G211600.1 | Wheat | nucleus | 35.96 | 48.17 |
| KRH35097 | Soybean | nucleus | 36.3 | 47.11 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 33.56 | 46.23 |
| KRG91702 | Soybean | cytosol, nucleus | 25.34 | 44.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.48 | 43.0 |
| HORVU3Hr1G051220.5 | Barley | cytosol, nucleus | 34.93 | 41.8 |
| Os08t0397900-01 | Rice | plasma membrane | 28.42 | 39.52 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400048373 | EnsemblPlantsGene:PGSC0003DMG400018792 | EntrezGene:102606378 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF3 | PGSC:PGSC0003DMG400018792 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002959E36 | UniProt:M1BMC2 | MapMan:35.2 | : |
Description
Holocarboxylase synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400018792]
Coordinates
chr12:-:54699781..54707596
Molecular Weight (calculated)
32627.9 Da
IEP (calculated)
6.370
GRAVY (calculated)
-0.596
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKRKSLAS SLDEVDRTMY STFCSAANSL SQLYTQAMNQ QKLSFLSGER HGMEKLYQWI LRQQEGGSRV TTVDIMNYLQ TFYFSVMVEI GALYGTVIYW
101: EPSAFLFEIL EKSPFKVVQW FELGTSMLEV SSSKPLASES KGFAFWVELI TPGLPSDHLS YVSELDYNGE DQSMSPRPPP QHSQPLHFTN SGFHVSPGPV
201: GVAVPGHGLR SDHDQQPKNN VFSNALSSPV RRSLQNYHIA QGSHFSNNAQ PPNATRNNET NSQHQNRDSN GYNSADASMD MHSDSPGHDS TY
101: EPSAFLFEIL EKSPFKVVQW FELGTSMLEV SSSKPLASES KGFAFWVELI TPGLPSDHLS YVSELDYNGE DQSMSPRPPP QHSQPLHFTN SGFHVSPGPV
201: GVAVPGHGLR SDHDQQPKNN VFSNALSSPV RRSLQNYHIA QGSHFSNNAQ PPNATRNNET NSQHQNRDSN GYNSADASMD MHSDSPGHDS TY
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.