Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005645_P001 | |
| Zm00001d020205_P001 | |
| Zm00001d044332_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09830.1 | Zm00001d005645_P001 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | Zm00001d020205_P001 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | Zm00001d044332_P001 | AT4G09830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03193 | Sorghum | nucleus | 92.54 | 91.63 |
| TraesCS3D01G214300.1 | Wheat | nucleus | 79.6 | 80.0 |
| TraesCS3B01G242000.1 | Wheat | nucleus | 79.6 | 80.0 |
| Os01t0589500-01 | Rice | nucleus | 78.61 | 79.0 |
| TraesCS3A01G211600.1 | Wheat | nucleus | 78.61 | 72.48 |
| HORVU3Hr1G051220.5 | Barley | cytosol, nucleus | 76.62 | 63.11 |
| PGSC0003DMT400064508 | Potato | nucleus | 52.74 | 50.24 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 52.74 | 50.0 |
| VIT_07s0031g01940.t01 | Wine grape | nucleus | 52.24 | 49.53 |
| Solyc04g071980.2.1 | Tomato | nucleus | 50.25 | 47.87 |
| KRH43349 | Soybean | nucleus | 50.25 | 46.98 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 50.25 | 46.76 |
| Zm00001d020205_P001 | Maize | nucleus | 45.27 | 46.67 |
| Zm00001d005645_P001 | Maize | nucleus | 45.27 | 46.67 |
| KRH59490 | Soybean | nucleus | 49.75 | 46.51 |
| PGSC0003DMT400036539 | Potato | cytosol | 18.41 | 45.68 |
| CDX99511 | Canola | nucleus | 43.28 | 45.55 |
| CDX86890 | Canola | nucleus | 42.29 | 45.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.77 | 45.41 |
| Solyc12g056630.1.1 | Tomato | nucleus | 43.28 | 45.31 |
| Bra037888.1-P | Field mustard | nucleus | 42.79 | 45.26 |
| CDY05080 | Canola | nucleus | 42.79 | 45.26 |
| Bra000694.1-P | Field mustard | nucleus | 42.29 | 44.74 |
| CDX90738 | Canola | nucleus | 42.29 | 44.74 |
| KRH08644 | Soybean | nucleus | 44.78 | 44.12 |
| AT4G09830.1 | Thale cress | nucleus | 41.79 | 43.98 |
| KRH70259 | Soybean | nucleus | 43.28 | 42.44 |
| KRH35097 | Soybean | nucleus | 41.79 | 37.33 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 23.38 | 35.07 |
| PGSC0003DMT400048373 | Potato | nucleus | 49.75 | 34.25 |
| KRG91702 | Soybean | cytosol, nucleus | 26.87 | 32.34 |
| VIT_11s0016g03800.t01 | Wine grape | plastid | 19.9 | 18.52 |
Protein Annotations
| EMBL:BT037121 | EnsemblPlants:Zm00001d044332_P001 | EnsemblPlants:Zm00001d044332_T001 | EnsemblPlantsGene:Zm00001d044332 | EntrezGene:100216658 | InterPro:UCP009193 |
| PANTHER:PTHR33675 | PANTHER:PTHR33675:SF5 | PIRSF:PIRSF009193 | ProteinID:ONM40906.1 | SEG:seg | UniParc:UPI00017B72AC |
| UniProt:B4FJ33 | MapMan:35.2 | : | : | : | : |
Description
Uncharacterised conserved protein UCP009193
Coordinates
chr3:-:225379001..225382142
Molecular Weight (calculated)
21997.4 Da
IEP (calculated)
7.295
GRAVY (calculated)
-0.697
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRRKTDAP PRLDEADRTL YSTFCGAANS LSQLYAQAMA QQKLNFHAGE RHALEKLYQW ILRKHDEEAR LTVAEIMSHI QHEIDYVGTD AHVSPRVPQH
101: PQIANPFANS VVPPGTGLYG QSAAGFAPRP SVTDQSKNTI FSNALSSPVR RSLQNSHTTQ GAGNGGRNAE ANLAGANREA NSTSSNDTSM DMVSDTNEFY
201: Q
101: PQIANPFANS VVPPGTGLYG QSAAGFAPRP SVTDQSKNTI FSNALSSPVR RSLQNSHTTQ GAGNGGRNAE ANLAGANREA NSTSSNDTSM DMVSDTNEFY
201: Q
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.