Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P35970_001 | Banana | nucleus | 64.73 | 63.21 |
| GSMUA_Achr3P26480_001 | Banana | nucleus | 55.56 | 54.76 |
| GSMUA_Achr1P14490_001 | Banana | nucleus | 55.07 | 53.77 |
| GSMUA_Achr2P08370_001 | Banana | nucleus | 54.11 | 53.08 |
| GSMUA_Achr8P04040_001 | Banana | nucleus | 53.62 | 52.61 |
| Os01t0589500-01 | Rice | nucleus | 50.72 | 52.5 |
| TraesCS3B01G242000.1 | Wheat | nucleus | 48.79 | 50.5 |
| TraesCS3D01G214300.1 | Wheat | nucleus | 48.79 | 50.5 |
| Os09t0360400-01 | Rice | nucleus | 45.89 | 48.47 |
| EES03193 | Sorghum | nucleus | 47.34 | 48.28 |
| Zm00001d005645_P001 | Maize | nucleus | 45.41 | 48.21 |
| EER96625 | Sorghum | nucleus | 44.93 | 47.69 |
| CDX99511 | Canola | nucleus | 43.96 | 47.64 |
| HORVU5Hr1G056860.2 | Barley | nucleus | 44.44 | 47.18 |
| TraesCS5B01G187800.1 | Wheat | nucleus | 44.44 | 47.18 |
| CDX86890 | Canola | nucleus | 42.51 | 47.06 |
| Bra037888.1-P | Field mustard | nucleus | 43.0 | 46.84 |
| Zm00001d044332_P001 | Maize | nucleus | 45.41 | 46.77 |
| TraesCS5A01G195600.1 | Wheat | nucleus | 43.96 | 46.67 |
| TraesCS5D01G195400.1 | Wheat | nucleus | 43.96 | 46.67 |
| Bra000694.1-P | Field mustard | nucleus | 42.51 | 46.32 |
| CDX90738 | Canola | nucleus | 42.51 | 46.32 |
| CDY05080 | Canola | nucleus | 42.51 | 46.32 |
| VIT_07s0031g01940.t01 | Wine grape | nucleus | 47.34 | 46.23 |
| Zm00001d020205_P001 | Maize | nucleus | 43.48 | 46.15 |
| AT4G09830.1 | Thale cress | nucleus | 42.51 | 46.07 |
| TraesCS3A01G211600.1 | Wheat | nucleus | 47.83 | 45.41 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 45.41 | 43.52 |
| PGSC0003DMT400036539 | Potato | cytosol | 16.91 | 43.21 |
| Os08t0397900-01 | Rice | plasma membrane | 43.48 | 42.86 |
| KRH08644 | Soybean | nucleus | 42.03 | 42.65 |
| PGSC0003DMT400064508 | Potato | nucleus | 43.0 | 42.18 |
| KRH70259 | Soybean | nucleus | 41.06 | 41.46 |
| KRH43349 | Soybean | nucleus | 43.0 | 41.4 |
| KRH59490 | Soybean | nucleus | 43.0 | 41.4 |
| Solyc12g056630.1.1 | Tomato | nucleus | 38.16 | 41.15 |
| Solyc04g071980.2.1 | Tomato | nucleus | 41.06 | 40.28 |
| HORVU3Hr1G051220.5 | Barley | cytosol, nucleus | 45.89 | 38.93 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 23.67 | 36.57 |
| KRH35097 | Soybean | nucleus | 38.65 | 35.56 |
| GSMUA_Achr10P... | Banana | nucleus | 35.27 | 34.27 |
| GSMUA_Achr10P... | Banana | nucleus | 36.72 | 30.52 |
| PGSC0003DMT400048373 | Potato | nucleus | 43.0 | 30.48 |
| KRG91702 | Soybean | cytosol, nucleus | 23.19 | 28.74 |
| VIT_11s0016g03800.t01 | Wine grape | plastid | 16.91 | 16.2 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP23900_001 | EnsemblPlants:GSMUA_AchrUn_randomT23900_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG23900_001 | InterPro:UCP009193 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF5 |
| PIRSF:PIRSF009193 | UniParc:UPI000296265E | UniProt:M0UBU8 | MapMan:35.2 | : | : |
Description
holocarboxylase synthetase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG23900_001]
Coordinates
chrchrUn_random:+:117612825..117616370
Molecular Weight (calculated)
22796.1 Da
IEP (calculated)
6.106
GRAVY (calculated)
-0.757
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKRKTEEA ATPLDEADRT LYSTFRGAAN SVSQLYTQSV HHRALSFHAG ERHALDKLRQ WILSQDEIGS RLTVADIATH IQNEMDFEVE NPSTSPISEF
101: QQQTQSTMHF MNSSAQPLFD PSSQASTGCV PPSGDSDQAK NCVFSNPLSG PARGSFQHCH LAQGCGVYAN GGARNHDPNH NQELNSLRSN ESSMDMNLDS
201: PTHQSYC
101: QQQTQSTMHF MNSSAQPLFD PSSQASTGCV PPSGDSDQAK NCVFSNPLSG PARGSFQHCH LAQGCGVYAN GGARNHDPNH NQELNSLRSN ESSMDMNLDS
201: PTHQSYC
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.