Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0589500-01 | |
| Os08t0397900-01 | |
| Os09t0360400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09830.1 | Os01t0589500-01 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | Os08t0397900-01 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | Os09t0360400-01 | AT4G09830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G056860.2 | Barley | nucleus | 86.22 | 86.67 |
| TraesCS5B01G187800.1 | Wheat | nucleus | 85.71 | 86.15 |
| TraesCS5A01G195600.1 | Wheat | nucleus | 85.2 | 85.64 |
| TraesCS5D01G195400.1 | Wheat | nucleus | 84.69 | 85.13 |
| EER96625 | Sorghum | nucleus | 84.18 | 84.62 |
| Zm00001d020205_P001 | Maize | nucleus | 83.16 | 83.59 |
| Zm00001d005645_P001 | Maize | nucleus | 81.63 | 82.05 |
| Os08t0397900-01 | Rice | plasma membrane | 62.24 | 58.1 |
| Os01t0589500-01 | Rice | nucleus | 52.55 | 51.5 |
| CDX99511 | Canola | nucleus | 46.94 | 48.17 |
| CDX86890 | Canola | nucleus | 45.92 | 48.13 |
| VIT_07s0031g01940.t01 | Wine grape | nucleus | 52.04 | 48.11 |
| Bra037888.1-P | Field mustard | nucleus | 46.43 | 47.89 |
| AT4G09830.1 | Thale cress | nucleus | 46.43 | 47.64 |
| CDY05080 | Canola | nucleus | 45.92 | 47.37 |
| Bra000694.1-P | Field mustard | nucleus | 45.41 | 46.84 |
| CDX90738 | Canola | nucleus | 45.41 | 46.84 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 51.02 | 46.3 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 50.0 | 46.23 |
| KRH43349 | Soybean | nucleus | 50.51 | 46.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.47 | 45.89 |
| PGSC0003DMT400036539 | Potato | cytosol | 18.88 | 45.68 |
| KRH59490 | Soybean | nucleus | 50.0 | 45.58 |
| KRH08644 | Soybean | nucleus | 46.43 | 44.61 |
| Solyc12g056630.1.1 | Tomato | nucleus | 43.37 | 44.27 |
| Solyc04g071980.2.1 | Tomato | nucleus | 46.94 | 43.6 |
| PGSC0003DMT400064508 | Potato | nucleus | 46.94 | 43.6 |
| KRH70259 | Soybean | nucleus | 43.37 | 41.46 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 25.51 | 37.31 |
| KRH35097 | Soybean | nucleus | 39.8 | 34.67 |
| PGSC0003DMT400048373 | Potato | nucleus | 50.0 | 33.56 |
| KRG91702 | Soybean | cytosol, nucleus | 25.0 | 29.34 |
| Os01t0182500-00 | Rice | nucleus | 29.59 | 28.71 |
| VIT_11s0016g03800.t01 | Wine grape | plastid | 18.37 | 16.67 |
Protein Annotations
| EMBL:AK071395 | EnsemblPlants:Os09t0360400-01 | EnsemblPlantsGene:Os09g0360400 | EntrezGene:4346845 | InterPro:UCP009193 | PANTHER:PTHR33675 |
| PANTHER:PTHR33675:SF5 | PIRSF:PIRSF009193 | ProteinID:BAD23319.1 | ProteinID:BAF24891.1 | ProteinID:BAT07687.1 | ProteinID:EAZ44445.1 |
| RefSeq:XP_015612627.1 | SEG:seg | UniParc:UPI00003B05E9 | UniProt:Q6K559 | MapMan:35.2 | : |
Description
Uncharacterised conserved protein UCP009193 domain containing protein. (Os09t0360400-01)
Coordinates
chr9:+:11735362..11740217
Molecular Weight (calculated)
21193.5 Da
IEP (calculated)
7.319
GRAVY (calculated)
-0.657
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGKKRKAE AARLEETDRA LYGAFRGAAN SLSQLYTLAM GGQKLSFQAG ERHAMEKLYE WILRQHENGL RLTVADIASH IQHEIQYGGD NASASPRSQH
101: ASQSTQATVP IPNTMSQQPS PNLFALGNTG LVQSKNSAVF SNALSSPVRR SLQPFHLEQG GDAGYFANGV NRDQNSTASN DSSMDMHSDS PAHDSY
101: ASQSTQATVP IPNTMSQQPS PNLFALGNTG LVQSKNSAVF SNALSSPVRR SLQPFHLEQG GDAGYFANGV NRDQNSTASN DSSMDMHSDS PAHDSY
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.