Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000694.1-P | |
| Bra037888.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09830.1 | Bra000694.1-P | AT4G09830.1 | 21798944 |
| AT4G09830.1 | Bra037888.1-P | AT4G09830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90738 | Canola | nucleus | 100.0 | 100.0 |
| CDY05080 | Canola | nucleus | 98.42 | 98.42 |
| Bra037888.1-P | Field mustard | nucleus | 92.63 | 92.63 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 64.21 | 91.04 |
| AT4G09830.1 | Thale cress | nucleus | 89.47 | 89.01 |
| KRH08644 | Soybean | nucleus | 64.21 | 59.8 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 67.89 | 59.72 |
| KRH70259 | Soybean | nucleus | 61.05 | 56.59 |
| PGSC0003DMT400064508 | Potato | nucleus | 58.42 | 52.61 |
| Solyc04g071980.2.1 | Tomato | nucleus | 56.32 | 50.71 |
| GSMUA_Achr3P26480_001 | Banana | nucleus | 55.79 | 50.48 |
| GSMUA_Achr2P08370_001 | Banana | nucleus | 55.26 | 49.76 |
| Solyc12g056630.1.1 | Tomato | nucleus | 49.47 | 48.96 |
| KRH35097 | Soybean | nucleus | 57.89 | 48.89 |
| GSMUA_Achr1P14490_001 | Banana | nucleus | 53.16 | 47.64 |
| GSMUA_Achr8P04040_001 | Banana | nucleus | 51.58 | 46.45 |
| HORVU5Hr1G056860.2 | Barley | nucleus | 47.37 | 46.15 |
| TraesCS5B01G187800.1 | Wheat | nucleus | 47.37 | 46.15 |
| TraesCS5D01G195400.1 | Wheat | nucleus | 46.84 | 45.64 |
| TraesCS5A01G195600.1 | Wheat | nucleus | 46.84 | 45.64 |
| Os01t0589500-01 | Rice | nucleus | 47.89 | 45.5 |
| Os09t0360400-01 | Rice | nucleus | 46.84 | 45.41 |
| EES03193 | Sorghum | nucleus | 48.42 | 45.32 |
| EER96625 | Sorghum | nucleus | 45.79 | 44.62 |
| Zm00001d005645_P001 | Maize | nucleus | 45.79 | 44.62 |
| Zm00001d020205_P001 | Maize | nucleus | 45.26 | 44.1 |
| TraesCS3D01G214300.1 | Wheat | nucleus | 46.32 | 44.0 |
| TraesCS3B01G242000.1 | Wheat | nucleus | 46.32 | 44.0 |
| Bra024327.1-P | Field mustard | nucleus | 39.47 | 43.1 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 47.89 | 42.92 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.32 | 42.51 |
| Zm00001d044332_P001 | Maize | nucleus | 44.74 | 42.29 |
| KRG91702 | Soybean | cytosol, nucleus | 36.32 | 41.32 |
| TraesCS3A01G211600.1 | Wheat | nucleus | 46.32 | 40.37 |
| Os08t0397900-01 | Rice | plasma membrane | 43.16 | 39.05 |
| PGSC0003DMT400048373 | Potato | nucleus | 57.89 | 37.67 |
| HORVU3Hr1G051220.5 | Barley | cytosol, nucleus | 45.26 | 35.25 |
Protein Annotations
| EnsemblPlants:Bra000694.1 | EnsemblPlants:Bra000694.1-P | EnsemblPlantsGene:Bra000694 | InterPro:UCP009193 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF3 |
| PIRSF:PIRSF009193 | SEG:seg | UniParc:UPI00025402FD | UniProt:M4C916 | MapMan:35.2 | : |
Description
AT4G09830 (E=5e-081) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP009193 (InterPro:IPR016549); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64780.1); Has 56 Blast hits to 56 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA03:+:12503356..12504511
Molecular Weight (calculated)
20958.4 Da
IEP (calculated)
6.920
GRAVY (calculated)
-0.723
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKRKATET SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPVDIINYIQ NELECCTEEP PISPRAPPPQ
101: PTMHVTNSGL IASSGTSCPT AVPAIRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YISGGTRSSE LNRGSDSPSS FDSSMDMHAE
101: PTMHVTNSGL IASSGTSCPT AVPAIRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YISGGTRSSE LNRGSDSPSS FDSSMDMHAE
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.