Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G051220.5 | |
| HORVU5Hr1G056860.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09830.1 | HORVU3Hr1G051220.5 | AT4G09830.1 | 21798944 |
| AT4G09830.1 | HORVU5Hr1G056860.2 | AT4G09830.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G214300.1 | Wheat | nucleus | 76.64 | 93.5 |
| TraesCS3B01G242000.1 | Wheat | nucleus | 76.64 | 93.5 |
| TraesCS3A01G211600.1 | Wheat | nucleus | 75.0 | 83.94 |
| Os01t0589500-01 | Rice | nucleus | 67.62 | 82.5 |
| EES03193 | Sorghum | nucleus | 65.16 | 78.33 |
| Zm00001d044332_P001 | Maize | nucleus | 63.11 | 76.62 |
| VIT_07s0031g01940.t01 | Wine grape | nucleus | 44.67 | 51.42 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 43.44 | 50.0 |
| PGSC0003DMT400064508 | Potato | nucleus | 42.62 | 49.29 |
| HORVU5Hr1G056860.2 | Barley | nucleus | 38.52 | 48.21 |
| VIT_18s0072g00100.t01 | Wine grape | nucleus | 42.21 | 47.69 |
| KRH43349 | Soybean | nucleus | 41.8 | 47.44 |
| Solyc04g071980.2.1 | Tomato | nucleus | 40.98 | 47.39 |
| KRH59490 | Soybean | nucleus | 41.39 | 46.98 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.93 | 45.89 |
| Bra037888.1-P | Field mustard | nucleus | 35.66 | 45.79 |
| CDY05080 | Canola | nucleus | 35.66 | 45.79 |
| CDX99511 | Canola | nucleus | 35.66 | 45.55 |
| CDX86890 | Canola | nucleus | 34.84 | 45.45 |
| Bra000694.1-P | Field mustard | nucleus | 35.25 | 45.26 |
| CDX90738 | Canola | nucleus | 35.25 | 45.26 |
| Solyc12g056630.1.1 | Tomato | nucleus | 35.25 | 44.79 |
| AT4G09830.1 | Thale cress | nucleus | 34.84 | 44.5 |
| PGSC0003DMT400036539 | Potato | cytosol | 14.75 | 44.44 |
| KRH08644 | Soybean | nucleus | 36.48 | 43.63 |
| KRH70259 | Soybean | nucleus | 35.66 | 42.44 |
| KRH35097 | Soybean | nucleus | 34.84 | 37.78 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 19.26 | 35.07 |
| PGSC0003DMT400048373 | Potato | nucleus | 41.8 | 34.93 |
| KRG91702 | Soybean | cytosol, nucleus | 22.13 | 32.34 |
| HORVU3Hr1G021220.8 | Barley | nucleus | 25.41 | 30.39 |
| VIT_11s0016g03800.t01 | Wine grape | plastid | 15.57 | 17.59 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G051220.5 | EnsemblPlantsGene:HORVU3Hr1G051220 | InterPro:UCP009193 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF3 | PIRSF:PIRSF009193 |
| SEG:seg | UniParc:UPI000B4680F6 | UniProt:A0A287L192 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr3H:-:370217161..370218780
Molecular Weight (calculated)
26498.8 Da
IEP (calculated)
7.390
GRAVY (calculated)
-0.520
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: AAAAAMARKR KTDAAPRLDE ADRTLYSSFC GAANSLSLLY SQAIAQQKLS FQAGERQALF SAIVWSGGRL VGEGMDTLGL TVDTKTSDLV ILRSYSYHEK
101: LHQWILRKHD EESRLTVADI MSHIQHEIDY GGTDAHVSPR VHQHPMTVNP FTSIQPSAGL YAQATSGHAP RPSLNDQSKN TIFSNALSSP VRRSLQTYHL
201: TQGAGNGGRN TEANSAAQNR EANSPSSNDT SMDMVSDITG NGYY
101: LHQWILRKHD EESRLTVADI MSHIQHEIDY GGTDAHVSPR VHQHPMTVNP FTSIQPSAGL YAQATSGHAP RPSLNDQSKN TIFSNALSSP VRRSLQTYHL
201: TQGAGNGGRN TEANSAAQNR EANSPSSNDT SMDMVSDITG NGYY
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.