Factsheet for GSMUA_Achr3P26480_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P14490_001
GSMUA_Achr2P08370_001
GSMUA_Achr3P26480_001
GSMUA_Achr6P35970_001
GSMUA_Achr8P04040_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09830.1	GSMUA_Achr1P14490_001	AT4G09830.1	21798944
AT4G09830.1	GSMUA_Achr2P08370_001	AT4G09830.1	21798944
AT4G09830.1	GSMUA_Achr3P26480_001	AT4G09830.1	21798944
AT4G09830.1	GSMUA_Achr6P35970_001	AT4G09830.1	21798944
AT4G09830.1	GSMUA_Achr8P04040_001	AT4G09830.1	21798944
AT4G09830.1	GSMUA_AchrUn_...	AT4G09830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P04040_001	Banana	nucleus	79.05	78.67
GSMUA_Achr1P14490_001	Banana	nucleus	79.05	78.3
GSMUA_Achr2P08370_001	Banana	nucleus	77.14	76.78
VIT_07s0031g01940.t01	Wine grape	nucleus	63.33	62.74
GSMUA_Achr6P35970_001	Banana	nucleus	60.0	59.43
KRH43349	Soybean	nucleus	60.48	59.07
KRH59490	Soybean	nucleus	59.52	58.14
AT4G09830.1	Thale cress	nucleus	51.9	57.07
VIT_18s0072g00100.t01	Wine grape	nucleus	58.57	56.94
CDX86890	Canola	nucleus	50.48	56.68
CDX99511	Canola	nucleus	51.43	56.54
Bra037888.1-P	Field mustard	nucleus	50.95	56.32
CDY05080	Canola	nucleus	50.95	56.32
PGSC0003DMT400064508	Potato	nucleus	56.19	55.92
Bra000694.1-P	Field mustard	nucleus	50.48	55.79
CDX90738	Canola	nucleus	50.48	55.79
GSMUA_AchrUn_...	Banana	nucleus	54.76	55.56
Solyc12g056630.1.1	Tomato	nucleus	49.05	53.65
PGSC0003DMT400036539	Potato	cytosol	20.48	53.09
Solyc04g071980.2.1	Tomato	nucleus	52.86	52.61
KRH08644	Soybean	nucleus	50.0	51.47
KRH70259	Soybean	nucleus	48.1	49.27
CDY60294	Canola	cytosol, nucleus, plastid	30.0	47.01
KRH35097	Soybean	nucleus	46.19	43.11
PGSC0003DMT400048373	Potato	nucleus	56.67	40.75
GSMUA_Achr10P...	Banana	nucleus	40.0	39.44
GSMUA_Achr10P...	Banana	nucleus	44.76	37.75
KRG91702	Soybean	cytosol, nucleus	29.52	37.13
VIT_11s0016g03800.t01	Wine grape	plastid	21.43	20.83

Protein Annotations

EnsemblPlants:GSMUA_Achr3P26480_001	EnsemblPlants:GSMUA_Achr3T26480_001	EnsemblPlantsGene:GSMUA_Achr3G26480_001	InterPro:UCP009193	PANTHER:PTHR33675	PANTHER:PTHR33675:SF3
PIRSF:PIRSF009193	UniParc:UPI000296E533	UniProt:M0SI14	MapMan:35.2	:	:

Description

holocarboxylase synthetase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G26480_001]

Coordinates

chr3:+:26306755..26311449

Molecular Weight (calculated)

23128.7 Da

IEP (calculated)

7.087

GRAVY (calculated)

-0.795

Length

210 amino acids

Sequence
(BLAST)

001: MARKRKTEAT RLDEVDRTLY STFCSAANSL SQLYTQAMNQ QKISFQAGER HALEKLYEWI LRKHEEGGRV TVADIVTHMQ SEMDYAGEDA LVSPRSPFQH
101: QSTMHVTNSG IQPTSGIFGQ PTVGLAPRSG HSDQAKNSVF SNALSSPVRR SLQPYHFAQG GGFYGNGVLP TGNAESRNDH GPNENRGTNS LGSNDSSMDI
201: HTDSRPHESY

Best Arabidopsis Sequence Match ( AT4G09830.1 )
(BLAST)

001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E

Arabidopsis Description

Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.