Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P14490_001 | Banana | nucleus | 43.19 | 43.4 |
| GSMUA_Achr8P04040_001 | Banana | nucleus | 42.72 | 43.13 |
| GSMUA_Achr2P08370_001 | Banana | nucleus | 41.78 | 42.18 |
| VIT_06s0004g00390.t01 | Wine grape | cytosol | 25.82 | 40.74 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 39.91 | 40.09 |
| GSMUA_Achr3P26480_001 | Banana | nucleus | 39.44 | 40.0 |
| AT5G64780.1 | Thale cress | nucleus | 31.46 | 38.29 |
| CDY14510 | Canola | nucleus | 30.99 | 37.93 |
| CDY08851 | Canola | nucleus | 30.52 | 37.36 |
| Bra024327.1-P | Field mustard | nucleus | 30.52 | 37.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.27 | 35.27 |
| GSMUA_Achr10P... | Banana | nucleus | 39.44 | 33.73 |
| TraesCS3B01G135700.1 | Wheat | nucleus | 27.7 | 29.06 |
| TraesCS3D01G118500.1 | Wheat | nucleus | 27.7 | 29.06 |
| HORVU3Hr1G021220.8 | Barley | nucleus | 27.7 | 28.92 |
| TraesCS3A01G116700.1 | Wheat | nucleus | 27.23 | 28.57 |
| Os01t0182500-00 | Rice | nucleus | 25.82 | 27.23 |
| KXG31677 | Sorghum | nucleus | 16.43 | 17.07 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P27320_001 | EnsemblPlants:GSMUA_Achr10T27320_001 | EnsemblPlantsGene:GSMUA_Achr10G27320_001 | InterPro:UCP009193 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF3 |
| PIRSF:PIRSF009193 | SEG:seg | UniParc:UPI0002948D29 | UniProt:M0RLV6 | MapMan:35.2 | : |
Description
holocarboxylase synthetase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G27320_001]
Coordinates
chr10:+:30517197..30521866
Molecular Weight (calculated)
23191.8 Da
IEP (calculated)
5.249
GRAVY (calculated)
-0.510
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKRKPEAV TRRLDEVDRT IYSTFRGGAN SLSQIYTQAL AQKKVAFQAG ERYALEKLYQ LIVRHSDAGS TVTVADIVAY LQAIFLFTDG EDTLTPNSEL
101: VHQHFQSAIQ STNGNVDNSA SLNGSAEGER IHQIGHCDQT KNPSFATAAL SSLVDSSSGL PCYLLQGPSS DGCLAQENET RYHESNPLNQ NGEMGPFDLS
201: SSSMDMHSDS PTR
101: VHQHFQSAIQ STNGNVDNSA SLNGSAEGER IHQIGHCDQT KNPSFATAAL SSLVDSSSGL PCYLLQGPSS DGCLAQENET RYHESNPLNQ NGEMGPFDLS
201: SSSMDMHSDS PTR
001: MGKKRKSEAT RLDEVDRTMY GAFRGAANSL SQLYTHAMNH QRVSFLAGER RGMEKLYQWI VRQEEQGTRV STADITTYLQ NALEYEPEET SIPLPMQEFY
101: QHQFAPPNVN TSVAHVPSSH IAQQQHYDCN QEKLLIPPNG LSSPVRRTLQ DFNLCEAESG NNNYNPNSTG EHLSY
101: QHQFAPPNVN TSVAHVPSSH IAQQQHYDCN QEKLLIPPNG LSSPVRRTLQ DFNLCEAESG NNNYNPNSTG EHLSY
Arabidopsis Description
Holocarboxylase synthetase [Source:UniProtKB/TrEMBL;Acc:Q9FGF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.