Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG32187 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G64780.1 | KXG32187 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G116700.1 | Wheat | nucleus | 40.98 | 41.38 |
| TraesCS3B01G135700.1 | Wheat | nucleus | 40.0 | 40.39 |
| TraesCS3D01G118500.1 | Wheat | nucleus | 40.0 | 40.39 |
| HORVU3Hr1G021220.8 | Barley | nucleus | 39.02 | 39.22 |
| Os01t0182500-00 | Rice | nucleus | 34.63 | 35.15 |
| EER96625 | Sorghum | nucleus | 20.0 | 21.03 |
| EES03193 | Sorghum | nucleus | 18.54 | 18.72 |
| GSMUA_Achr10P... | Banana | nucleus | 21.46 | 17.67 |
| GSMUA_Achr10P... | Banana | nucleus | 17.07 | 16.43 |
| VIT_06s0004g00390.t01 | Wine grape | cytosol | 10.73 | 16.3 |
| Bra024327.1-P | Field mustard | nucleus | 12.68 | 14.94 |
| CDY08851 | Canola | nucleus | 12.68 | 14.94 |
| CDY14510 | Canola | nucleus | 12.68 | 14.94 |
| AT5G64780.1 | Thale cress | nucleus | 11.71 | 13.71 |
Protein Annotations
| EnsemblPlants:KXG31677 | EnsemblPlantsGene:SORBI_3003G041000 | ncoils:Coil | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF5 | ProteinID:KXG31677 |
| ProteinID:KXG31677.1 | ProteinID:OQU86189.1 | SEG:seg | UniParc:UPI00081AC94C | UniProt:A0A1B6Q161 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr3:-:3831208..3833855
Molecular Weight (calculated)
22323.6 Da
IEP (calculated)
5.920
GRAVY (calculated)
-0.768
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAHAAKKRR PEEEEEAAAA EEVHLAFRGA ANALSQVYAH AVAHQKASFV AGERRAMENV HQWLSSQLEE ASEVPVAAML AYLQNEIEHR RGDPVASPQH
101: PSQQQTHNIP PANVQCNPFS FGNIAAALDS RMDETDQTSN SGVPNSLPDP LRQNFHSNHL IQASGYGSNN SCPNRNAPRN NQSPQNQDSV NCNLTASMDM
201: HCDGP
101: PSQQQTHNIP PANVQCNPFS FGNIAAALDS RMDETDQTSN SGVPNSLPDP LRQNFHSNHL IQASGYGSNN SCPNRNAPRN NQSPQNQDSV NCNLTASMDM
201: HCDGP
001: MGKKRKSTAT SLDEVDRTVY ASFRTAANSL SQLYTQSMNH QKLSFQAGER HGLEKLYQWI WRQQEGGSRV TPMDIVNYIQ NELECCIDEP PISPRAPPPQ
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
101: PTMHVTNPGL MTTSGTSFPT AVPVVRSEQC ENQAKNSVFS NALSSPIRRS LQNYQIPQGG YTSGGTTRSS EVNRGSNSPG SIDSSMDMHA E
Arabidopsis Description
Nuclear receptor family 2 group C protein [Source:UniProtKB/TrEMBL;Acc:Q9SZ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.