Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P26480_001 | Banana | nucleus | 37.75 | 44.76 |
| GSMUA_Achr2P08370_001 | Banana | nucleus | 37.75 | 44.55 |
| GSMUA_Achr1P14490_001 | Banana | nucleus | 37.35 | 43.87 |
| GSMUA_Achr8P04040_001 | Banana | nucleus | 36.95 | 43.6 |
| GSMUA_Achr6P35970_001 | Banana | nucleus | 35.34 | 41.51 |
| AT5G64780.1 | Thale cress | nucleus | 28.51 | 40.57 |
| GSMUA_Achr10P... | Banana | nucleus | 33.73 | 39.44 |
| VIT_06s0004g00390.t01 | Wine grape | cytosol | 20.88 | 38.52 |
| CDY14510 | Canola | nucleus | 26.51 | 37.93 |
| CDY08851 | Canola | nucleus | 26.51 | 37.93 |
| Bra024327.1-P | Field mustard | nucleus | 26.1 | 37.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.52 | 36.72 |
| TraesCS3B01G135700.1 | Wheat | nucleus | 28.51 | 34.98 |
| TraesCS3D01G118500.1 | Wheat | nucleus | 28.51 | 34.98 |
| TraesCS3A01G116700.1 | Wheat | nucleus | 28.11 | 34.48 |
| HORVU3Hr1G021220.8 | Barley | nucleus | 27.31 | 33.33 |
| Os01t0182500-00 | Rice | nucleus | 25.7 | 31.68 |
| KXG31677 | Sorghum | nucleus | 17.67 | 21.46 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P21000_001 | EnsemblPlants:GSMUA_Achr10T21000_001 | EnsemblPlantsGene:GSMUA_Achr10G21000_001 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF3 | UniParc:UPI0002969504 |
| UniProt:M0RK25 | MapMan:35.2 | : | : | : | : |
Description
holocarboxylase synthetase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G21000_001]
Coordinates
chr10:+:26804583..26807862
Molecular Weight (calculated)
27875.6 Da
IEP (calculated)
7.424
GRAVY (calculated)
-0.642
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKRKSEDT HLDEADRTIY SVFRGAANSL SLIYTQAMTQ QELAFQTGER HALEKLYQLI LRHDEGSRVT VADILAYLQN EIGHGGEDTA MSPIPQLPHQ
101: YPQSSMQFGS TNIHDSSTIG TAAVCLARTG HREETKDTVF SNALSSPVRR SLESYHPAQG GGDGGASHDT ALPQENTIRN HGSNHLDQSQ DSRTCSDSGN
201: HHSILYLRFM WWKWQMKNSY PFLQRKPCTS LAVADAVWKL RICRGNLNF
101: YPQSSMQFGS TNIHDSSTIG TAAVCLARTG HREETKDTVF SNALSSPVRR SLESYHPAQG GGDGGASHDT ALPQENTIRN HGSNHLDQSQ DSRTCSDSGN
201: HHSILYLRFM WWKWQMKNSY PFLQRKPCTS LAVADAVWKL RICRGNLNF
001: MGKKRKSEAT RLDEVDRTMY GAFRGAANSL SQLYTHAMNH QRVSFLAGER RGMEKLYQWI VRQEEQGTRV STADITTYLQ NALEYEPEET SIPLPMQEFY
101: QHQFAPPNVN TSVAHVPSSH IAQQQHYDCN QEKLLIPPNG LSSPVRRTLQ DFNLCEAESG NNNYNPNSTG EHLSY
101: QHQFAPPNVN TSVAHVPSSH IAQQQHYDCN QEKLLIPPNG LSSPVRRTLQ DFNLCEAESG NNNYNPNSTG EHLSY
Arabidopsis Description
Holocarboxylase synthetase [Source:UniProtKB/TrEMBL;Acc:Q9FGF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.