Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08851 | Canola | nucleus | 89.66 | 89.66 |
| AT5G64780.1 | Thale cress | nucleus | 73.56 | 73.14 |
| CDX86890 | Canola | nucleus | 43.1 | 40.11 |
| CDY05080 | Canola | nucleus | 43.68 | 40.0 |
| CDX99511 | Canola | nucleus | 43.68 | 39.79 |
| CDX90738 | Canola | nucleus | 43.1 | 39.47 |
| VIT_06s0004g00390.t01 | Wine grape | cytosol | 26.44 | 34.07 |
| GSMUA_Achr10P... | Banana | nucleus | 37.93 | 30.99 |
| CDY60294 | Canola | cytosol, nucleus, plastid | 20.69 | 26.87 |
| GSMUA_Achr10P... | Banana | nucleus | 37.93 | 26.51 |
| TraesCS3B01G135700.1 | Wheat | nucleus | 30.46 | 26.11 |
| TraesCS3D01G118500.1 | Wheat | nucleus | 30.46 | 26.11 |
| TraesCS3A01G116700.1 | Wheat | nucleus | 29.31 | 25.12 |
| Os01t0182500-00 | Rice | nucleus | 28.16 | 24.26 |
| HORVU3Hr1G021220.8 | Barley | nucleus | 27.59 | 23.53 |
| KXG31677 | Sorghum | nucleus | 14.94 | 12.68 |
Protein Annotations
| EnsemblPlants:CDY14510 | EnsemblPlantsGene:GSBRNA2T00079217001 | InterPro:UCP009193 | PANTHER:PTHR33675 | PANTHER:PTHR33675:SF3 | PIRSF:PIRSF009193 |
| ProteinID:CDY14510 | ProteinID:CDY14510.1 | UniParc:UPI0004EF0397 | UniProt:A0A078FJ86 | MapMan:35.2 | : |
Description
BnaC03g49490DBnaC03g49490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJ86]
Coordinates
chrLK032044:-:78158..79665
Molecular Weight (calculated)
19882.0 Da
IEP (calculated)
6.652
GRAVY (calculated)
-0.873
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKKRKSDAS RLDEVDRTMY GAFRGAANSL SQLYTHAMNH QRVSFLAGER RGLEKLHQWI VRQEEEGTRV STDDITTYLQ NELEYEPEET SIPAPMQEFH
101: HNHQFAPPNV HTSSAALAPS SHIAQHYDFN QEKVFLTQPN GLSSPVRRTL QDFSLREAEP GNHHHPNSTG QGFF
101: HNHQFAPPNV HTSSAALAPS SHIAQHYDFN QEKVFLTQPN GLSSPVRRTL QDFSLREAEP GNHHHPNSTG QGFF
001: MGKKRKSEAT RLDEVDRTMY GAFRGAANSL SQLYTHAMNH QRVSFLAGER RGMEKLYQWI VRQEEQGTRV STADITTYLQ NALEYEPEET SIPLPMQEFY
101: QHQFAPPNVN TSVAHVPSSH IAQQQHYDCN QEKLLIPPNG LSSPVRRTLQ DFNLCEAESG NNNYNPNSTG EHLSY
101: QHQFAPPNVN TSVAHVPSSH IAQQQHYDCN QEKLLIPPNG LSSPVRRTLQ DFNLCEAESG NNNYNPNSTG EHLSY
Arabidopsis Description
Holocarboxylase synthetase [Source:UniProtKB/TrEMBL;Acc:Q9FGF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.