Factsheet for TraesCS4A01G088300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G116700.1
TraesCS3B01G135700.1
TraesCS3D01G118500.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09320.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT5G09320.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT5G09320.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT5G09320.1	TraesCS3A01G116700.1	AT5G64780.1	21798944
AT5G09320.1	TraesCS3B01G135700.1	AT5G64780.1	21798944
AT5G09320.1	TraesCS3D01G118500.1	AT5G64780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G061320.1	Barley	cytosol	90.89	88.82
TraesCS4D01G216400.1	Wheat	cytosol	88.77	88.21
TraesCS4B01G215900.1	Wheat	cytosol	88.98	88.05
Os03t0262900-02	Rice	cytosol, plasma membrane	79.03	77.71
OQU92877	Sorghum	cytosol	73.09	73.4
Zm00001d047863_P004	Maize	cytosol	74.79	69.63
GSMUA_Achr8P18180_001	Banana	cytosol	60.17	68.27
VIT_18s0001g04140.t01	Wine grape	cytosol	56.36	57.45
CDY51691	Canola	cytosol	48.52	57.39
CDY24616	Canola	cytosol	53.81	54.51
Bra022450.1-P	Field mustard	cytosol	53.6	54.41
KRH53154	Soybean	cytosol	52.75	53.32
AT5G09320.1	Thale cress	cytosol	48.52	52.4
KRH64753	Soybean	cytosol	51.48	52.26
Solyc01g096990.2.1	Tomato	cytosol	52.97	51.55
PGSC0003DMT400070782	Potato	cytosol	53.81	50.5
Bra009378.1-P	Field mustard	cytosol	52.33	48.24
AT3G19770.1	Thale cress	cytosol	51.91	47.12
TraesCS4A01G343800.3	Wheat	cytosol	31.78	42.73
CDY21574	Canola	cytosol	48.94	36.21
CDX69912	Canola	cytosol	52.12	34.5

Protein Annotations

EnsemblPlants:TraesCS4A01G088300.1	EnsemblPlantsGene:TraesCS4A01G088300	Gene3D:1.10.246.120	Gene3D:1.20.1050.80	InterPro:IPR003123	InterPro:IPR037191
InterPro:VPS9	InterPro:VPS9_dom_sf	PANTHER:PTHR23101	PANTHER:PTHR23101:SF63	PFAM:PF02204	PFscan:PS51205
SEG:seg	SMART:SM00167	SUPFAM:SSF109993	MapMan:22.8.3.1	:	:

Description

No Description!

Coordinates

chr4A:+:93890896..93895565

Molecular Weight (calculated)

52843.9 Da

IEP (calculated)

4.498

GRAVY (calculated)

-0.543

Length

472 amino acids

Sequence
(BLAST)

001: MEGGADAFGS STAPLAWHDF LERMRQPSAA EFVKSIKGFI MTFSNRAPDP EGDSTAVQEF LENMEGAFRA HTPWAGSSEE ELESAGEGLE KYVMTKLYNR
101: VFASVPEDVK SDEELFEKIS LLQQFIRPEN LDIKPEYQNE TSWLLAQKEL QKINMYKAPR DKLACILNCC KVINNLLMNA SHMSHDNPPG ADEFLPVLIY
201: VTIKANPPQL HSNLLYIQRY RCQSRLVSEA QYFFTNLLSA ESFIWNIEAE SLSMDERDFQ KKMDLARERL LGLSVGSENQ ENQTNLDAGE HRPQALKASG
301: NSDVNLPLKD HIQGPVQDMK RESDVSSKSV ERVQSISDLE KKGATELVKD DDLNKISQEY PFLFARAGDL TVADVDNLLN SYKQLVLKYV ALSKGMGVTP
401: ETPLVQNMQT ASHLQISEEP ENVKNVVNSC DSTEASNKAH EDIKNEIPDS EVSNISTQQA AVDESSGQPE HA

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.