Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G09320.1 | CDX86457 | AT3G27960.1 | 21798944 |
| AT5G09320.1 | CDY58518 | AT3G27960.1 | 21798944 |
| AT5G09320.1 | CDY08148 | AT3G49580.1 | 21798944 |
| AT5G09320.1 | CDY08851 | AT5G64780.1 | 21798944 |
| AT5G09320.1 | CDY14510 | AT5G64780.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51691 | Canola | cytosol | 42.48 | 67.92 |
| AT5G09320.1 | Thale cress | cytosol | 44.36 | 64.76 |
| CDX69912 | Canola | cytosol | 71.94 | 64.38 |
| CDY24616 | Canola | cytosol | 44.36 | 60.73 |
| GSMUA_Achr8P18180_001 | Banana | cytosol | 35.74 | 54.81 |
| VIT_18s0001g04140.t01 | Wine grape | cytosol | 38.09 | 52.48 |
| KRH64753 | Soybean | cytosol | 36.99 | 50.75 |
| KRH53154 | Soybean | cytosol | 36.99 | 50.54 |
| OQU92877 | Sorghum | cytosol | 37.15 | 50.43 |
| Os03t0262900-02 | Rice | cytosol, plasma membrane | 37.3 | 49.58 |
| TraesCS4A01G088300.1 | Wheat | cytosol | 36.21 | 48.94 |
| TraesCS4B01G215900.1 | Wheat | cytosol | 35.58 | 47.59 |
| HORVU4Hr1G061320.1 | Barley | cytosol | 35.74 | 47.2 |
| Solyc01g096990.2.1 | Tomato | cytosol | 35.58 | 46.8 |
| TraesCS4D01G216400.1 | Wheat | cytosol | 34.8 | 46.74 |
| Zm00001d047863_P004 | Maize | cytosol | 36.52 | 45.96 |
| PGSC0003DMT400070782 | Potato | cytosol | 35.89 | 45.53 |
| CDY24606 | Canola | cytosol, mitochondrion, nucleus | 6.58 | 37.5 |
Protein Annotations
| Gene3D:1.10.246.120 | Gene3D:1.20.1050.80 | Gene3D:1.25.40.10 | MapMan:22.8.3.1 | UniProt:A0A078G840 | EnsemblPlants:CDY21574 |
| ProteinID:CDY21574 | ProteinID:CDY21574.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00016037001 |
| InterPro:IPR002885 | InterPro:IPR003123 | InterPro:IPR011990 | InterPro:IPR037191 | PFAM:PF02204 | PFscan:PS51205 |
| PFscan:PS51375 | PANTHER:PTHR23101 | PANTHER:PTHR23101:SF25 | InterPro:Pentatricopeptide_repeat | SMART:SM00167 | SUPFAM:SSF109993 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI0004EE8F11 | InterPro:VPS9 | InterPro:VPS9_dom_sf | SEG:seg | : |
Description
BnaC09g47180DBnaC09g47180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G840]
Coordinates
chrLK032122:-:305721..309006
Molecular Weight (calculated)
72204.3 Da
IEP (calculated)
6.357
GRAVY (calculated)
-0.402
Length
638 amino acids
Sequence
(BLAST)
(BLAST)
001: MENIDVFPGL HDFFERMRKP SAGDFVKSIK SFIVSFSNNA PNPEKDSEAV QEFFTKMEAA FRAHPLWSGS SEEDLDSAAD GLEKYVMTKL FTRVFASNTE
101: DVISDEKLFQ KMSLVQQFIS PESLDIQPTF QNETSWLLAQ KELQKMNMYK APRDKLMCIL SCCKVINNLL LNASVASKEN APGADEFLPV LIYVTIKANP
201: PQFHSNLLYI QRYRRQSKLV GEASYFFTNL LSAESFISNI DAKSLSMDES DFEKKMESAR ARLSGLGSQS YQTDHGAAPT AYNPKRETTL LQSQSSGSLS
301: GTNETLNQRS ELPIKKAESI SDLENKGAAT LLNDNSEASK ILKEYPYVFA SAALQGEGDN VHKLSDVKQE DYKRERESLT ANMEGIGLRG EILRLGFTPR
401: RGVCGRSPVL RRAMVVKMRD RSKNRKPLQR GRMLSIEAIQ AVQALKRANP PPPPSPSPSS SSSMLHRVID SKIRRLLKFD MVAVLRELLR QNECSLALKV
501: FEEIRKEYWY KPQVRLYADM ISVMADNNLL DEVSYLYAAM KSEKGLVADT ESFNTLLVML LNHKLFELVM DCYAFMQSIG YEPDRTSFRV LVQGLESNGE
601: MSLSGIVRQD AHEYYGESLE FSDEIEDISS LLIPQWRR
101: DVISDEKLFQ KMSLVQQFIS PESLDIQPTF QNETSWLLAQ KELQKMNMYK APRDKLMCIL SCCKVINNLL LNASVASKEN APGADEFLPV LIYVTIKANP
201: PQFHSNLLYI QRYRRQSKLV GEASYFFTNL LSAESFISNI DAKSLSMDES DFEKKMESAR ARLSGLGSQS YQTDHGAAPT AYNPKRETTL LQSQSSGSLS
301: GTNETLNQRS ELPIKKAESI SDLENKGAAT LLNDNSEASK ILKEYPYVFA SAALQGEGDN VHKLSDVKQE DYKRERESLT ANMEGIGLRG EILRLGFTPR
401: RGVCGRSPVL RRAMVVKMRD RSKNRKPLQR GRMLSIEAIQ AVQALKRANP PPPPSPSPSS SSSMLHRVID SKIRRLLKFD MVAVLRELLR QNECSLALKV
501: FEEIRKEYWY KPQVRLYADM ISVMADNNLL DEVSYLYAAM KSEKGLVADT ESFNTLLVML LNHKLFELVM DCYAFMQSIG YEPDRTSFRV LVQGLESNGE
601: MSLSGIVRQD AHEYYGESLE FSDEIEDISS LLIPQWRR
001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE
Arabidopsis Description
VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.