CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022450.1-P	Field mustard	cytosol	90.73	77.85
CDY24616	Canola	cytosol	86.72	74.25
AT3G19770.1	Thale cress	cytosol	77.19	59.23
CDY24606	Canola	cytosol, mitochondrion, nucleus	16.29	58.04
GSMUA_Achr8P18180_001	Banana	cytosol	57.89	55.53
VIT_18s0001g04140.t01	Wine grape	cytosol	62.41	53.78
KRH64753	Soybean	cytosol	60.9	52.26
OQU92877	Sorghum	cytosol	61.4	52.13
KRH53154	Soybean	cytosol	60.9	52.03
Os03t0262900-02	Rice	cytosol, plasma membrane	59.4	49.38
TraesCS4A01G088300.1	Wheat	cytosol	57.39	48.52
TraesCS4B01G215900.1	Wheat	cytosol	57.39	48.01
Solyc01g096990.2.1	Tomato	cytosol	57.64	47.42
HORVU4Hr1G061320.1	Barley	cytosol	57.14	47.2
TraesCS4D01G216400.1	Wheat	cytosol	56.14	47.16
Zm00001d047863_P004	Maize	cytosol	59.65	46.94
PGSC0003DMT400070782	Potato	cytosol	58.4	46.32
CDY21574	Canola	cytosol	67.92	42.48
CDX69912	Canola	cytosol	70.93	39.69

Protein Annotations

Gene3D:1.10.246.120	Gene3D:1.20.1050.80	MapMan:22.8.3.1	GO:A0A078IP05	UniProt:A0A078IP05	EnsemblPlants:CDY51691
ProteinID:CDY51691	ProteinID:CDY51691.1	ncoils:Coil	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00004031001	InterPro:IPR003123	InterPro:IPR037191	PFAM:PF02204	PFscan:PS51205	PANTHER:PTHR23101
PANTHER:PTHR23101:SF63	SMART:SM00167	SUPFAM:SSF109993	TMHMM:TMhelix	UniParc:UPI0004EE6259	InterPro:VPS9
InterPro:VPS9_dom_sf	SEG:seg	:	:	:	:

Description

BnaA05g36780DBnaA05g36780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IP05]

Coordinates

chrLK033019:-:42843..44562

Molecular Weight (calculated)

45168.7 Da

IEP (calculated)

5.004

GRAVY (calculated)

-0.286

Length

399 amino acids

Sequence
(BLAST)

001: MENNTDVSIH DFLERMRKPS AGDLVKSIKS FIVSFLNNEP DPEKDSAAVQ DFFSKMEAAF RAHPLWSGCS EDELDSAGDG LEKYVMTKLF PRVFASNTED
101: VISDEKLFQK MSLVQQFISP EYLDIKPTFQ NETSWLLAQK ELQKINMYKA PRDKLVCVLN CCKVINNLLL NASIASNENT PGADEFLPVL IYVTIKANPP
201: QLHSNLLYIQ RYRRESKLVG EAAYFFTNIL SAESFISNID AKSLSMDEAE FEKNMESARA RISGLSSHPT APPPPRDESS VHKTQMLNPK RENTIVQSRS
301: SDSLSGTSDI LNANSEIPVK KVESVSDLEN KGAARLLKDT EANKIFQEYP YLFANAGDLR IGDVESLFFF FFFFFFFFFL EVLVKLVNKP TISQNPKSF

Best Arabidopsis Sequence Match ( AT3G19770.1 )
(BLAST)

001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE

Arabidopsis Description

VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.