Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24616 | Canola | cytosol | 76.79 | 18.45 |
| CDY51691 | Canola | cytosol | 58.04 | 16.29 |
| Zm00001d007243_P001 | Maize | endoplasmic reticulum | 14.29 | 9.3 |
| CDX69912 | Canola | cytosol | 45.54 | 7.15 |
| CDY21574 | Canola | cytosol | 37.5 | 6.58 |
| KRH62573 | Soybean | endoplasmic reticulum, extracellular | 17.86 | 5.05 |
| TraesCS5B01G530100.1 | Wheat | cytosol | 15.18 | 4.86 |
| TraesCS5B01G530300.1 | Wheat | cytosol | 15.18 | 4.86 |
| TraesCS4A01G343800.3 | Wheat | cytosol | 15.18 | 4.84 |
| TraesCS5D01G529100.1 | Wheat | cytosol | 15.18 | 4.84 |
| GSMUA_Achr6P18560_001 | Banana | cytosol | 16.07 | 4.83 |
| Zm00001d034796_P005 | Maize | cytosol | 14.29 | 4.57 |
| KXG37171 | Sorghum | cytosol | 13.39 | 4.29 |
| HORVU5Hr1G120090.3 | Barley | cytosol | 14.29 | 4.15 |
| Zm00001d004146_P001 | Maize | cytosol | 7.14 | 2.99 |
| Zm00001d004675_P001 | Maize | cytosol | 3.57 | 1.83 |
| Zm00001d046521_P001 | Maize | nucleus | 3.57 | 1.69 |
| Os03t0842700-03 | Rice | cytosol | 0.0 | 0.0 |
| VIT_18s0089g01070.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| Zm00001d020119_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d047622_P002 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY24606 | EnsemblPlantsGene:GSBRNA2T00026957001 | ncoils:Coil | ProteinID:CDY24606 | ProteinID:CDY24606.1 | SEG:seg |
| UniParc:UPI0004EDCFA4 | UniProt:A0A078GGX4 | MapMan:35.2 | : | : | : |
Description
BnaC05g32900DBnaC05g32900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGX4]
Coordinates
chrLK032161:+:391534..392047
Molecular Weight (calculated)
11974.6 Da
IEP (calculated)
4.119
GRAVY (calculated)
-0.739
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEAEFEKNM ESARARISGL SNQPTAPPPL RDDDIVNANS EIPMKKVESV SDLEDKGAAK ANKISQEYPY LFANTGLGDA TTSLASSSTP PLQALSGFDT
101: AKEPEDEHTT SS
101: AKEPEDEHTT SS
001: MAAQKELQKI NMYKAPRDKL VCILNCCKVI NNLLLNASIA SNENAPGADE FLPVLIYVTI KANPPQLHSN LLYIQRYRRE SKLVGEAAYF FTNILSAESF
101: ISNIDAKSIS LDEAEFEKNM ESARARISGL DSQTYQTGHG SAPPPRDEST LQKTQSLNPK RENTLFQSKS SDSLSGTNEL LNINSETPMK KAESISDLEN
201: KGATLLKDTE PSKVFQEYPY IFASAGDLRI GDVEGLLNSY KQLVFKYVCL TKGLGDGTSL APSSSPLQAS SGFNTSKESE DHRRSSSDVQ MTKETDRSVD
301: DLIRALHGEG EDVNNLSDVK HEEYGAMLVE GKDEERDSKV QGEVDAKDIE LMKQIPKREG DNSSSRPAED EDVGSKQPVT EASE
101: ISNIDAKSIS LDEAEFEKNM ESARARISGL DSQTYQTGHG SAPPPRDEST LQKTQSLNPK RENTLFQSKS SDSLSGTNEL LNINSETPMK KAESISDLEN
201: KGATLLKDTE PSKVFQEYPY IFASAGDLRI GDVEGLLNSY KQLVFKYVCL TKGLGDGTSL APSSSPLQAS SGFNTSKESE DHRRSSSDVQ MTKETDRSVD
301: DLIRALHGEG EDVNNLSDVK HEEYGAMLVE GKDEERDSKV QGEVDAKDIE LMKQIPKREG DNSSSRPAED EDVGSKQPVT EASE
Arabidopsis Description
VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.